PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G15090.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 458aa    MW: 50988.2 Da    PI: 4.5739
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G15090.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.13.1e-4841311128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtd elv++yLk+k+ gkk  + ++i++v++yk+ PwdLp + ++++++ ew+fF++rd ky++g+r+nr+t +gyWk++gkd+++
  OPUNC05G15090.2   4 LPPGFRFHPTDVELVSYYLKRKIMGKKPLI-QAISDVELYKFAPWDLPaQsCLQSRDLEWFFFCPRDMKYPKGSRTNRSTPNGYWKTSGKDRTI 96 
                      79*************************777.88**************95347778888************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++ vg kktL+f++g+apkg++tdWvm ey++
  OPUNC05G15090.2  97 EL-NSRIVGSKKTLIFHEGKAPKGNRTDWVMYEYKM 131
                      **.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-572154IPR003441NAC domain
PROSITE profilePS5100555.5524154IPR003441NAC domain
PfamPF023651.3E-255130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MACLPPGFRF HPTDVELVSY YLKRKIMGKK PLIQAISDVE LYKFAPWDLP AQSCLQSRDL  60
EWFFFCPRDM KYPKGSRTNR STPNGYWKTS GKDRTIELNS RIVGSKKTLI FHEGKAPKGN  120
RTDWVMYEYK MEDNQLISAG FSKDDFVLCK IFKKSGLGPR IGEQYGAPFN EEDWEHADAE  180
TSMFPLLPNV ETSVFPLLPS SEVVNSTDDI RVRPSVAARA IEELPVQHLP DACAGNRSTY  240
QSITVTDECA HMELPSQHSV ESIGDGVVSV DNCSNVVNNA DSPVVDGLVL EELSRFLIDS  300
PHHGILAGEH SGLPPMSEAE AHAFEVNTND LYNEIAGLAE LDVPNDDGFS LPNAGVTEQH  360
TSQPTYVGVP SSENYVNMDD IFAPDTRLSY AYPLPNNQFW HYPMDQSTYD NTTLSAVFPS  420
GDSRWTMHIV DDLPAVANNG GFASKPSMQF PLTLILMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-48415515169Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3621600.0AB362160.1 Oryza sativa Japonica Group mRNA for transcription factor, complete cds.
GenBankAK0995400.0AK099540.1 Oryza sativa Japonica Group cDNA clone:J013032G17, full insert sequence.
GenBankEU8469980.0EU846998.1 Oryza sativa Japonica Group clone KCS104B01 NAM-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639254.10.0NAC domain-containing protein 78 isoform X1
TrEMBLA0A0E0L2R70.0A0A0E0L2R7_ORYPU; Uncharacterized protein
STRINGOPUNC05G15090.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-79NAC domain containing protein 103