PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G14760.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 408aa    MW: 44069.2 Da    PI: 6.9667
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G14760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1583.8e-49421672128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      +pGfrFhPt+eel+ +yL++kveg+++++ e i+ +d+y+++Pw+Lp+++  +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ +  +
  OPUNC05G14760.1  42 MPGFRFHPTEEELIEFYLRRKVEGRRFNV-ELITFLDLYRFDPWELPAMAVIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRGE 134
                      79***************************.89***************7777899**************************************** PP

              NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +glkktLvfy+g+apkg++++W+m+eyrl
  OPUNC05G14760.1 135 NSRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 167
                      *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-5841190IPR003441NAC domain
PROSITE profilePS5100554.90341190IPR003441NAC domain
PfamPF023651.7E-2443167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MSRDVDDGSV VDVTAGAGSG EEAAAEEEAA AAGDSHENDL VMPGFRFHPT EEELIEFYLR  60
RKVEGRRFNV ELITFLDLYR FDPWELPAMA VIGEKEWFFY VPRDRKYRNG DRPNRVTASG  120
YWKATGADRM IRGENSRPIG LKKTLVFYSG KAPKGVRSSW IMNEYRLPPP AANADLFYKS  180
EISLCRVYKR SGIDDGHGHH RPTSNVQASS AAARPPEHSG NTAGLPAGRH RPSPSSSTTT  240
QQHTSFHQLL QGECSSSAPP PPLSLPASAT RNNASQLLMP PPPPPPPRPQ CAAYTSAAAV  300
VAPTESATVL AAASTYSLLA AGSSSTHIDE LSTLLVGHSH GGAYGNHTVT GSHHHFLPMP  360
PPSQLMPQLG TMPISPPLAA VSDKLWDWSS VPDTTARDYN SSGLSDPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-564319119166NO APICAL MERISTEM PROTEIN
1ut4_B8e-564319119166NO APICAL MERISTEM PROTEIN
1ut7_A8e-564319119166NO APICAL MERISTEM PROTEIN
1ut7_B8e-564319119166NO APICAL MERISTEM PROTEIN
4dul_A8e-564319119166NAC domain-containing protein 19
4dul_B8e-564319119166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1349330.0AC134933.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0579A05, complete sequence.
GenBankAC1376230.0AC137623.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0426G01, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637953.10.0NAC domain-containing protein 35
TrEMBLA0A0E0L2M10.0A0A0E0L2M1_ORYPU; Uncharacterized protein
STRINGOPUNC05G14760.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.12e-95NAC domain containing protein 35