PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G14600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 305aa MW: 33951.4 Da PI: 4.6853 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.9 | 4.5e-45 | 10 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp GfrFhPtdeelv +yL+++++g ++++ +i++v+iy+++Pw+Lp+++ +e+ewyfF+ rd++y+++ r++r+++sg+Wkatg+dk++ + OPUNC05G14600.1 10 LPTGFRFHPTDEELVINYLQRRATGLSCPI-PIIADVEIYNFNPWELPSMALFGEHEWYFFTLRDHRYPNSVRPSRSAASGFWKATGTDKPIQV 102 699***************************.88***************76667999************************************99 PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ + +kk Lvfy gr p +kt+W+mheyrl OPUNC05G14600.1 103 AnmQSTPIAMKKALVFYVGRPPLETKTTWIMHEYRL 138 8667777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-54 | 4 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.257 | 10 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-24 | 11 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MAMRLSLPIL PTGFRFHPTD EELVINYLQR RATGLSCPIP IIADVEIYNF NPWELPSMAL 60 FGEHEWYFFT LRDHRYPNSV RPSRSAASGF WKATGTDKPI QVANMQSTPI AMKKALVFYV 120 GRPPLETKTT WIMHEYRLTN MTGSTASHVS LPLSTAYPSL KLDEWVLCKI FNKAPEPDNT 180 APPSNVSRLQ CPPPLPVSAT NNGDVFTGAG DMLFTIQEHQ EGTSSMLRQY SQSQTVLPPI 240 PNLEPPAATV GNSSLNGTTT AAAADGHGCP EEEDTSAYTF TDQEMEQMLM DLMDQDFFGN 300 DRPQE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-59 | 10 | 176 | 15 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119651 | 0.0 | AK119651.1 Oryza sativa Japonica Group cDNA clone:002-130-G11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638459.1 | 0.0 | NAC transcription factor 25 | ||||
Swissprot | Q8GY42 | 4e-67 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | A0A0E0L2J9 | 0.0 | A0A0E0L2J9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G14600.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16207 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 7e-69 | NAC domain containing protein 25 |