PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G13600.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 666aa    MW: 72586.8 Da    PI: 5.5732
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G13600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like47.24.8e-15316369255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgL..tlehvkSHLQkYRl 55 
                       r  Wt e H+ Fv+a  qL  ++k  Pk+i++lm+++g+  t +++ SHLQkYR 
  OPUNC05G13600.1 316 LRFIWTRETHSVFVNAYYQL--KDKKGPKRIKQLMELEGIfvTKAQISSHLQKYRC 369
                      6899****************..*****************65599***********5 PP
2Response_reg65.32.8e-22261311107
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                      vl+vdD+ + +e l+ +l  +gy +v+  +++eeal+ l+++    +D++++D++mpgmdG++ll + +    +lp+i+++ +++  ++ +a+ 
  OPUNC05G13600.1  26 VLVVDDDAAYLEDLKIMLLLSGY-SVTGKTTAEEALQELEQNPeyyFDIVMTDVQMPGMDGFDLLHRVKG---RLPVIMFSESEDVVMVMRAIL 115
                      89*********************.9999999999999998877788*******************99998...67******************* PP

                      TTESEEEESS--HHHH CS
     Response_reg  92 aGakdflsKpfdpeel 107
                       Ga d+ +Kp+  e++
  OPUNC05G13600.1 116 DGACDYMMKPITSEAI 131
                      ***********99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.7E-3223159No hitNo description
SuperFamilySSF521726.97E-3123149IPR011006CheY-like superfamily
SMARTSM004481.7E-2624135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.43725139IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-1926131IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.92E-2627139No hitNo description
Gene3DG3DSA:1.10.10.601.1E-14313372IPR009057Homeodomain-like
SuperFamilySSF466895.2E-9314372IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-11315368IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MAAENNAVPP AGCKLPAAGF LGRLHVLVVD DDAAYLEDLK IMLLLSGYSV TGKTTAEEAL  60
QELEQNPEYY FDIVMTDVQM PGMDGFDLLH RVKGRLPVIM FSESEDVVMV MRAILDGACD  120
YMMKPITSEA IKIIWKHVLR RRLSDLPTRA SSLPRDRLAV ALAAMAPSPP PTLWPGDDQE  180
VVFPQPPAPK ENINVDVQEA AKVMEAALLQ PPLALVPDGN GGGDVQEASL VQPPVLVVAG  240
NMCGDVQEVA LAQHPAPASV GNKHDDILEA VVVAISAGSS HADGQETVAK KRGVPEVSDM  300
GSNNFEPKEE RKKAKLRFIW TRETHSVFVN AYYQLKDKKG PKRIKQLMEL EGIFVTKAQI  360
SSHLQKYRCW LETTKNQEEG HSTYNQLSNS IDHPDICYST AWKKNSIIRE GPLSKMFSSR  420
PVHSMVTSTG RFSTTQSNYV GVGPKEIENF ISSHHRSQGT AIGHGSAIRH ENLCYEATSG  480
RYVHGNGSSQ VRGNAMNNGT SASHGVAITN ENLLQVIRAS LPSNMGQQMQ PSQSLSKNDL  540
AANFSAVSDQ NPRTSYKANS SATHNQNPVT QEISVRQPVE VGYGNNVMLD WPELGGLDDQ  600
LDNDTLMNSL SEVDQLKHGV ITVTDGTQEI STFGTTGDFS SLLSEGLNNE IPNPESTSRM  660
NGTHQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xso_A2e-132515716158Response regulator FixJ
5xt2_A2e-132515716158Response regulator FixJ
5xt2_B2e-132515716158Response regulator FixJ
5xt2_C2e-132515716158Response regulator FixJ
5xt2_D2e-132515716158Response regulator FixJ
5xt2_E2e-132515716158Response regulator FixJ
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639050.10.0two-component response regulator ORR27
SwissprotQ75HW20.0ORR27_ORYSJ; Two-component response regulator ORR27
TrEMBLA0A0E0L2740.0A0A0E0L274_ORYPU; Uncharacterized protein
STRINGOPUNC05G13600.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159621113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-26response regulator 11
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]