PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G12590.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 530aa    MW: 55043 Da    PI: 6.7319
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G12590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS247.84.4e-76834872374
             GRAS   2 velLlecAeavssgdle.laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                      v+ L ++A a+++g+ + +++  L+ + +la   g ++mqRlaa f+eALa r    +++++++l  +++++   + + aa++ f  ++P++++
  OPUNC05G12590.1  83 VRFLRSIAAALADGECHlQVNDGLSCVADLAGGGGgRSMQRLAAAFAEALALRFILPCDGVCRSLYLTQAPP--PEAVSAARQGFRAMCPFVRL 174
                      5678889999999888768999999999999888879****************************9999885..5556678889********** PP

             GRAS  94 shltaNqaIleavege.ervHiiDfdis.qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      +  +aN  I e +e e   vH++D++ +    QW+ L + La+Rp+gpp  lR+T+v++     ++ l++ +      A++lgv+++f+++  +
  OPUNC05G12590.1 175 AAAAANLSIAEVMEAErGVVHVVDLGGGaDANQWVELVRVLAARPGGPPsLLRLTVVNE----AEDFLSAAAAYVGAEAQRLGVNVQFHPV-KS 263
                      ****************7788*****9762689*************9999679*******....8999***********************5.66 PP

             GRAS 185 rledl...eleeLrvkpgEalaVnlvlqlhrll......................desvsles.erdevLklvkslsPkvvvvveqeadhnses 252
                      ++e+l       L v  g alaV   lq+hrll                      + ++++++ + d++L+++++lsPk+vv++e+eadhn ++
  OPUNC05G12590.1 264 SIEALpgiGAAGLGVIAGQALAVVATLQIHRLLafpdddgvgrrpaaeqsgsrrqH-TMTTTKtKADALLRTIRGLSPKLVVLTEHEADHNVGE 356
                      66665444899*****************************************9953.444444489**************************** PP

             GRAS 253 Flerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                      ++ r+ +al+yy+alfd++ea+ p+ s ++r+ vEr +lg+ei+++v  eg+ rrerhe+le+W +r+ +aGF+p++ ++ +ak+  l  ++v+
  OPUNC05G12590.1 357 LVPRVWNALNYYAALFDAVEASSPPVSpHDRACVERWVLGEEIMDIVVREGTGRRERHEKLERWAARMIAAGFSPMTATKAMAKTETLAQQMVA 450
                      **********************9999999***********************************************998877766665555655 PP

             GRAS 346 sdg.......yrveeesgslv.lgWkdrpLvsvSaWr 374
                        g        r  +  g++  ++W d p++svS W+
  OPUNC05G12590.1 451 AGGagagagvLRAAHGGGCFPvICWCDVPVFSVSTWT 487
                      4443344433333455777757**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.60756459IPR005202Transcription factor GRAS
PfamPF035141.5E-7383487IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MAAEIPRLVL GGRRGERLPA PPMAAAAEED SPAATNTRKH PVVGSSLAAM AAAAAAGIQP  60
DPFALVGAAE YPADDGERDL LMVRFLRSIA AALADGECHL QVNDGLSCVA DLAGGGGGRS  120
MQRLAAAFAE ALALRFILPC DGVCRSLYLT QAPPPEAVSA ARQGFRAMCP FVRLAAAAAN  180
LSIAEVMEAE RGVVHVVDLG GGADANQWVE LVRVLAARPG GPPSLLRLTV VNEAEDFLSA  240
AAAYVGAEAQ RLGVNVQFHP VKSSIEALPG IGAAGLGVIA GQALAVVATL QIHRLLAFPD  300
DDGVGRRPAA EQSGSRRQHT MTTTKTKADA LLRTIRGLSP KLVVLTEHEA DHNVGELVPR  360
VWNALNYYAA LFDAVEASSP PVSPHDRACV ERWVLGEEIM DIVVREGTGR RERHEKLERW  420
AARMIAAGFS PMTATKAMAK TETLAQQMVA AGGAGAGAGV LRAAHGGGCF PVICWCDVPV  480
FSVSTWTARR VLVPAPPLWP AAAAAGGGAS GSRYGDGLAT ASSSAAMWWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2711848953381Protein SCARECROW
5b3h_A2e-2711848952380Protein SCARECROW
5b3h_D2e-2711848952380Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209870.0AC120987.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0007A06, complete sequence.
GenBankAC1362180.0AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881539.10.0scarecrow-like protein 3
TrEMBLA0A0E0L1W40.0A0A0E0L1W4_ORYPU; Uncharacterized protein
STRINGOPUNC05G12590.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170631012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-45scarecrow-like 3