PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G10620.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 488aa    MW: 51324.5 Da    PI: 8.7151
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G10620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.52.8e-33192250260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +DgynWrKYGqK+vkgse+prsYY+Ct++gC++kkkvers  d+++++i+Y+g Hnh+k
  OPUNC05G10620.1 192 EDGYNWRKYGQKQVKGSENPRSYYKCTYNGCSMKKKVERSLADGRITQIVYKGAHNHPK 250
                      8********************************************************85 PP
2WRKY105.82.3e-33354412159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg++WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d+++v++tYeg+Hnh+
  OPUNC05G10620.1 354 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERASHDTRAVITTYEGKHNHD 412
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.451186251IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-29189251IPR003657WRKY domain
SuperFamilySSF1182906.28E-26190251IPR003657WRKY domain
SMARTSM007742.9E-36191250IPR003657WRKY domain
PfamPF031062.6E-25192249IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-36339414IPR003657WRKY domain
SuperFamilySSF1182903.27E-29346414IPR003657WRKY domain
PROSITE profilePS5081138.124349414IPR003657WRKY domain
SMARTSM007743.6E-39354413IPR003657WRKY domain
PfamPF031061.4E-25355412IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MASSTGGLDH GFTFTPPPFI TSFTELLSGG GDMLAGAGGE ERSPRGFSRG GARVGGGVPK  60
FKSAQPPSLP LSPPPVSPSS YFAIPPGLSP TELLDSPVLL SSSHILASPT TGAIPAQRYD  120
WKASADLIAS QQDDSSRGDF SFHTNSDAMA AQPSSFPSFK EQEQQVVEAS KNTAASSNKS  180
GGANGGGNNK LEDGYNWRKY GQKQVKGSEN PRSYYKCTYN GCSMKKKVER SLADGRITQI  240
VYKGAHNHPK PLSTRRNASS GCAAACADDL AVPGGAGADQ YSAATPENSS VTFGDDEADN  300
GSHRSEGDEP EAKRWKEDAD NEGSSGGMGG AGAGGKPVRE PRLVVQTLSD IDILDDGFRW  360
RKYGQKVVKG NPNPRSYYKC TTVGCPVRKH VERASHDTRA VITTYEGKHN HDVPVGRGGG  420
GRAPAAPPPA PARRSSAPRT SRETTCSSSR SSASAELGPT SPCSPRHCHV GPTGTVYAYH  480
TGYAYMYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-35176414277Probable WRKY transcription factor 4
2lex_A9e-35176414277Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1904360.0AB190436.1 Oryza sativa Japonica Group OsWRKY53 mRNA for transcription factor OsWRKY53, complete cds.
GenBankAY6769290.0AY676929.1 Oryza sativa (indica cultivar-group) transcription factor WRKY53 (WRKY53) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640377.10.0WRKY transcription factor WRKY24 isoform X1
SwissprotQ6B6R41e-112WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A0E0L1780.0A0A0E0L178_ORYPU; Uncharacterized protein
STRINGOPUNC05G10620.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.12e-93WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]