PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G06200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 293aa MW: 33098.5 Da PI: 9.0158 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.5 | 1.4e-31 | 69 | 119 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ OPUNC05G06200.1 69 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 119 79***********************************************95 PP | |||||||
2 | K-box | 102.4 | 5.9e-34 | 137 | 233 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 s+ + ++e +a+++qqe+akLk +i nLq+++R l+G++++++++++L+qLe +L+k+l kiR++Knell+++ie++q++e elq++n++L++k OPUNC05G06200.1 137 SNASTVSEINAQHYQQEAAKLKLQITNLQNSNRTLVGDNITTMNHRDLKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKTK 230 3444499*************************************************************************************** PP K-box 98 lee 100 ++e OPUNC05G06200.1 231 VAE 233 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.8E-40 | 61 | 120 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.59 | 61 | 121 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-33 | 63 | 83 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.49E-33 | 63 | 134 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.68E-45 | 63 | 135 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 63 | 117 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-26 | 70 | 117 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-33 | 83 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-33 | 98 | 119 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.9E-25 | 144 | 231 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.289 | 147 | 237 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MGQGLCRPHM GRAIQIEELA NMHIYKEQEA EPSTGLMMPE PAPAASGGSG GSGSVGAEKI 60 GSRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN 120 SVKETIERYK KANSDTSNAS TVSEINAQHY QQEAAKLKLQ ITNLQNSNRT LVGDNITTMN 180 HRDLKQLEGR LDKGLGKIRA RKNELLCAEI EYMQRRETEL QNDNMYLKTK VAESERGLQT 240 VNMMGSASTS EYVQNMIHYD PRNFLQFNIM QQPQYYPEQE DRKAFMSGLA LSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 2e-19 | 63 | 133 | 2 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 2e-19 | 63 | 133 | 2 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 2e-19 | 63 | 133 | 2 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 2e-19 | 63 | 133 | 2 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
3kov_A | 3e-19 | 63 | 148 | 2 | 90 | Myocyte-specific enhancer factor 2A |
3kov_B | 3e-19 | 63 | 148 | 2 | 90 | Myocyte-specific enhancer factor 2A |
3kov_I | 3e-19 | 63 | 148 | 2 | 90 | Myocyte-specific enhancer factor 2A |
3kov_J | 3e-19 | 63 | 148 | 2 | 90 | Myocyte-specific enhancer factor 2A |
3p57_A | 3e-19 | 63 | 148 | 2 | 90 | Myocyte-specific enhancer factor 2A |
3p57_B | 3e-19 | 63 | 148 | 2 | 90 | Myocyte-specific enhancer factor 2A |
3p57_C | 3e-19 | 63 | 148 | 2 | 90 | Myocyte-specific enhancer factor 2A |
3p57_D | 3e-19 | 63 | 148 | 2 | 90 | Myocyte-specific enhancer factor 2A |
3p57_I | 3e-19 | 63 | 148 | 2 | 90 | Myocyte-specific enhancer factor 2A |
3p57_J | 3e-19 | 63 | 148 | 2 | 90 | Myocyte-specific enhancer factor 2A |
5f28_A | 4e-19 | 63 | 148 | 3 | 91 | MEF2C |
5f28_B | 4e-19 | 63 | 148 | 3 | 91 | MEF2C |
5f28_C | 4e-19 | 63 | 148 | 3 | 91 | MEF2C |
5f28_D | 4e-19 | 63 | 148 | 3 | 91 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB232157 | 0.0 | AB232157.1 Oryza sativa Japonica Group mRNA for transcription factor OsMADS58, complete cds. | |||
GenBank | FJ750942 | 0.0 | FJ750942.1 Oryza sativa clone KCS268A08 MADS-box transcription factor 58 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638060.1 | 0.0 | MADS-box transcription factor 58 isoform X1 | ||||
Swissprot | Q2V0P1 | 0.0 | MAD58_ORYSJ; MADS-box transcription factor 58 | ||||
TrEMBL | A0A0E0KZM3 | 0.0 | A0A0E0KZM3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G06200.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 7e-93 | MIKC_MADS family protein |