PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G05650.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 298aa    MW: 32000.3 Da    PI: 9.9016
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G05650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-14123167347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ +  +lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  OPUNC05G05650.1 123 PWTEEEHRMFLAGLDKLGKGDWRGISRHFVTTRTPTQVASHAQKY 167
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.68318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.988116172IPR017930Myb domain
SuperFamilySSF466891.44E-18117173IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-18119171IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-11120166IPR009057Homeodomain-like
SMARTSM007171.9E-11120170IPR001005SANT/Myb domain
CDDcd001677.65E-10123168No hitNo description
PfamPF002499.9E-12123167IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MARKCSSCGN NGHNSRTCSG QRVVDNSIIS SNSGNTTAAA TACGGLRLFG VQLQVGGGSS  60
PLKKCLSMEC LASPAYYGAS ASPSVSSSSS SLVSIEENTE RVSSGYLSDG LMGRGQERKK  120
GVPWTEEEHR MFLAGLDKLG KGDWRGISRH FVTTRTPTQV ASHAQKYFLR QNSLTQKKRR  180
SSLFDVIEGG KRAAAMSMAG SASELQIPGM SIGVSAAKEE VVLPPCLNLM SNSSSASQHS  240
PSLKLLANPQ VQLQMPDLEL KMSTSRLSDQ SEVRRCNSGC HFQKRLDQIW VKHLAGHF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0614270.0AK061427.1 Oryza sativa Japonica Group cDNA clone:006-306-H01, full insert sequence.
GenBankAK0655940.0AK065594.1 Oryza sativa Japonica Group cDNA clone:J013029P13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654137.11e-144PREDICTED: transcription factor MYB1R1-like
TrEMBLA0A0E0KZG50.0A0A0E0KZG5_ORYPU; Uncharacterized protein
STRINGOPUNC05G05650.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-46MYB_related family protein