PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G05600.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 350aa    MW: 38907.1 Da    PI: 9.6467
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G05600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1157.5e-36482001128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......... 77 
                      +p+G+rF+Ptd+el+ e+L++kv++        ++++ + i+   +i++++P++Lp  v+ +  + +fF++++k+y+tg+rk+r+         
  OPUNC05G05600.1  48 MPAGVRFDPTDQELI-EHLEAKVKDGGstshplIDEFIHtIQGEdGICYTHPENLP-GVTMDGLSKHFFHRSAKAYPTGTRKRRKvladqpddq 139
                      699************.99******9987777664443344777756**********.455567899******************88******** PP

              NAM  78 .........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               +++ +W++tgk++++++ +g+ +g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  OPUNC05G05600.1 140 pqasksrnvAAETRWHKTGKTRAIMV-RGQPKGCKKILVLYtnFGKKRKSEKTNWVMHQYHL 200
                      *****999978999************.999***********54479999***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-3740219IPR003441NAC domain
PROSITE profilePS5100531.17348219IPR003441NAC domain
PfamPF023651.6E-1649200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSSDGASGSI GMKHDDDDHR PITGASSRRC PSCGHDPDCN KPFDMVGMPA GVRFDPTDQE  60
LIEHLEAKVK DGGSTSHPLI DEFIHTIQGE DGICYTHPEN LPGVTMDGLS KHFFHRSAKA  120
YPTGTRKRRK VLADQPDDQP QASKSRNVAA ETRWHKTGKT RAIMVRGQPK GCKKILVLYT  180
NFGKKRKSEK TNWVMHQYHL GELEDEKEGE LILSKVFYQT QTRSAAATET PVSSGASMKV  240
QGQQQQVLKL ADDGQFSSVP TKKRLHEDAV AQVKVDRGHH CMQAQRHVSF NLKATPVPTI  300
SSFPVVVDKQ LYSPVALFRR KNFNSSTTKR QIGLTSAGLL TTNINMDKWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-134220214147NAC domain-containing protein 19
3swm_B1e-134220214147NAC domain-containing protein 19
3swm_C1e-134220214147NAC domain-containing protein 19
3swm_D1e-134220214147NAC domain-containing protein 19
3swp_A1e-134220214147NAC domain-containing protein 19
3swp_B1e-134220214147NAC domain-containing protein 19
3swp_C1e-134220214147NAC domain-containing protein 19
3swp_D1e-134220214147NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0880960.0JQ088096.1 Oryza sativa Japonica Group NAC transcription factor 85 (NAC85) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637950.10.0NAC domain-containing protein 75 isoform X2
SwissprotQ9M0F83e-94NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0E0KZF80.0A0A0E0KZF8_ORYPU; Uncharacterized protein
STRINGOPUNC05G05600.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.12e-87NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]