PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G01900.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 1783aa    MW: 191681 Da    PI: 6.842
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G01900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07928970347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W +eE e++ +  + +G++ +++I++ ++ ++t  +c+++++k+
  OPUNC05G01900.1 928 PWIQEEKEIFMEKLATFGKD-FSKISSFLQ-HKTTADCIEFYYKH 970
                      899***************99.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.12E-13911973IPR009057Homeodomain-like
PROSITE profilePS5129314.547924975IPR017884SANT domain
SMARTSM007174.8E-7925973IPR001005SANT/Myb domain
PfamPF002491.1E-5928970IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-5928972IPR009057Homeodomain-like
PROSITE profilePS5129313.72811321183IPR017884SANT domain
SMARTSM007176.6E-411331181IPR001005SANT/Myb domain
SuperFamilySSF466891.71E-811371183IPR009057Homeodomain-like
CDDcd001670.0013811371175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1783 aa     Download sequence    Send to blast
MWEEPDRART WASTAGASRP ATRRRRRGRG FGVGGEVVVV VVFFLGLPVR GSASSERSWP  60
LIVGAGAASS VFLPLLSLPH LSPLLLSFLL LPCAAPASVS ASTAAVLPAR RSARLRRRCR  120
LADVGTSLGA GGTADLRRQT SAAAAAAADS AGDGGKEEEA LPSWLLHRVY AATGAGDSRG  180
LDDDDDHHHH AVDASAAAGS EGLPVQGWPQ ARRRPPPTAS PHAAQGGGSY DRSYPDESLG  240
YTPSRSDRYW LDDDGGGGGY KGFSRYGGGG GGGSRRDGRD IRGSYRRSPF RGYGSDFSRN  300
HQEHPPPPLR RSPLRSVAVP MSYDPPGDRA DRGDRDHHHR VTPWRLLRRR ESRSDAADAA  360
GAGPVPVGQA ATVAASEKDV SARSSAVAAP QVSHEEAPRK KPRLGWGQGL AKYEKQKVQG  420
PAESAEAVAE GSPTATEQKG VTHTPAPAPC ASPVAAPSPA PCASPVAVPS PAPCASPVVA  480
PSPAPPCKSP VPEDKSCELT ANTVTESNKN IPGPDVQACN NEVPTKLDQL EGDPIDSLAK  540
VLSELVQHED SCSGDSKRLS NVSKLLLLKE SISKELEKTE LEIDSLEGEL KSVNAEARNR  600
TLKDPPSAVT YAQNPSPSPV KEQGELTPSP KIPVEQDAYV KGSDLMEVET AQAHNAKAVS  660
SEESVACPGD APGQVPAAAD IIPSDPCGKT GSGIDVDIEQ HEENPCQDNF NAMKADGSSD  720
LTTRPCSYRN VKYNLMDQII AANRSEANKN SQLLFKPVPA DRSNLDLLAS SYLSSQMKND  780
VIIKKKHAIL KNRQRFKEQI LTFKFRVLRH LWKEDVRLLS VRKQRSKSHK RTDQSNRASQ  840
SGSQRQRSSN RSRLAVPAGN LSTFPITEMS DVANKLFSEF QLKRCRNYLK MPALIIDEKE  900
KACAKFVSKN GLVEDPVSVE KERALINPWI QEEKEIFMEK LATFGKDFSK ISSFLQHKTT  960
ADCIEFYYKH HKSDSFREVK KLLDLRQQQQ PASNYLGAVS GKKWNPEANA ASLDMLGVAT  1020
EVAAQGLEYV NEVKKNSAKS ILRTVCGADN STKGSEDCVG DVSLHEKESV AADVLAGICG  1080
TLSPEGMGSC ITSSADPGQK IGIISRMEHL LTPEADKNFD DDGTLSDQEC EVDIVDWNDD  1140
EKSSFIEAMN RYGKDFARIS SYVKSKSFEQ CKVFFSKARK SLGLDMIHQG AADAGFPTGD  1200
ANGGRSGTDG ACVAEMDSAI CSAQSCPKME IDACPVSGEI QGHNPLSDIA SRQPEADKSN  1260
EPDVVDINVK EGGSKAEKDC SILVDHKQLR EDTHQTSYAR IDINCPESTD KLQDIEDVTP  1320
VDMHGDDLMA TSIEQPLVEQ PVAAHVETRS SLHSEGIGMD VSRIEGCSHE SAIGKGGKST  1380
PSVCLPANGV SKENIIHFSN MDGASSISPA FTSNYQQSKL ADSIQSKPKP LTPKDLMPVQ  1440
FSSSLPDPTS ICFEGIAAIT TPNFEDHGNR ASIASGAKDV NMFQTFKDQC SNRHDALFSN  1500
VDGYMQQRRN SHFGTEVCGL SESTDISQSD QFAVSKFQNG RSSSLGLSNG NLGVLSTGRR  1560
EEAREGLFRP SSVKASAGNE EQQKRPGDVK LFGQILSHQS SLQSSGSSVH VSKSKPPSPK  1620
VDKSASSRLL SNPRERLVYS SRPPSIVNLG LEERAMRSFD HMDGRTIQPE PMVMVAKCQR  1680
SSAGVPVYST KNGALSVFAE FQQPSMPPHT SDHKLLENFA DLHKRNGIEL LSGFQQPGRL  1740
GGAGVLVSGV SDPVAALKAQ YGSGSKMLSS SNDVDTWKDI GSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C7e-16886977494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D7e-16886977494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0706530.0AK070653.1 Oryza sativa Japonica Group cDNA clone:J023055D14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639126.10.0uncharacterized protein LOC9268524
RefseqXP_015639127.10.0uncharacterized protein LOC9268524
RefseqXP_015639128.10.0uncharacterized protein LOC9268524
RefseqXP_015639129.10.0uncharacterized protein LOC9268524
TrEMBLA0A0E0KY290.0A0A0E0KY29_ORYPU; Uncharacterized protein
STRINGOPUNC05G01900.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.12e-78MYB family protein