PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G01700.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 179aa MW: 20465.5 Da PI: 7.9856 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.8 | 5.1e-10 | 112 | 145 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++e++ +LA+ +gL+ +q+ +WF N+R ++ OPUNC05G01700.4 112 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 145 69*****************************885 PP | |||||||
2 | ELK | 34.1 | 5.9e-12 | 65 | 86 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ OPUNC05G01700.4 65 ELKEMLLKKYSGCLSRLRSEFL 86 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 10.423 | 65 | 85 | IPR005539 | ELK domain |
SMART | SM01188 | 3.6E-6 | 65 | 86 | IPR005539 | ELK domain |
Pfam | PF03789 | 6.9E-9 | 65 | 86 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.681 | 85 | 148 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-14 | 87 | 152 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.78E-20 | 87 | 157 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-27 | 90 | 150 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.63E-14 | 97 | 149 | No hit | No description |
Pfam | PF05920 | 2.2E-17 | 105 | 144 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 123 | 146 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MVNVVLLPHH LSLMSYMTFC LKLSLICNIS MQDEMVGSSE DEPCSGDADA ADFGQEHSSR 60 LADHELKEML LKKYSGCLSR LRSEFLKKRK KGKLPKDARS ALMDWWNTHY RWPYPTEEDK 120 VRLAAMTGLD PKQINNWFIN QRKRHWKPSE DMRFALMEGV TGGSSSGTTL YFDTGTIGP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 89 | LRSEFLKKRK |
2 | 86 | 90 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007624 | 0.0 | AB007624.1 Oryza sativa Japonica Group HOS9 mRNA, partial cds. | |||
GenBank | AB028885 | 0.0 | AB028885.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH71, complete cds. | |||
GenBank | AF050180 | 0.0 | AF050180.1 Oryza sativa strain Indica IR58 KNOX class homeodomain protein (Oskn2) mRNA, complete cds. | |||
GenBank | AK111878 | 0.0 | AK111878.1 Oryza sativa Japonica Group cDNA clone:J033046I12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637898.1 | 1e-106 | homeobox protein knotted-1-like 10 | ||||
Swissprot | A2Y007 | 1e-107 | KNOSA_ORYSI; Homeobox protein knotted-1-like 10 | ||||
Swissprot | Q7GDL5 | 1e-107 | KNOSA_ORYSJ; Homeobox protein knotted-1-like 10 | ||||
TrEMBL | A0A0E0KY08 | 1e-132 | A0A0E0KY08_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G01700.4 | 1e-133 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.2 | 2e-40 | KNOTTED1-like homeobox gene 6 |