PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC05G01600.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 144aa MW: 14846.9 Da PI: 4.7586

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC05G01600.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	55	2.4e-17	10	68	44	100
DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqq..qleqlkaelallkee 100 + l++lpee+r da+ss+vyeA+ar+rdPvyG++g i +lq+ q++ lka+la++++e OPUNC05G01600.1 10 SSLQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKqkQVNDLKAQLARAHAE 68 5699**********************************997622688899999998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.618	1	69	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-15	11	66	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MASSPLMSSS SLQELPEEQR ADAVSSMVYE ANARIRDPVY GCAGAICQLQ KQKQVNDLKA 60 QLARAHAELA GARAQHAHLV ALLCMEMAAA GPPQPTTTTA AAAYCAAVGA SPAAPVDALY 120 VVDGAAAAAM QASPIGWVDE PLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-15	12	69	56	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-15	12	69	56	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079021	1e-169	AC079021.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0008A07, complete sequence.
GenBank	AC093089	1e-169	AC093089.1 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1729_E02, complete sequence.
GenBank	AP014961	1e-169	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638880.1	5e-72	LOB domain-containing protein 1
Swissprot	Q9LQR0	4e-23	LBD1_ARATH; LOB domain-containing protein 1
Swissprot	Q9SK08	6e-23	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A0E0KXZ1	1e-97	A0A0E0KXZ1_ORYPU; Uncharacterized protein
STRING	OPUNC05G01600.1	2e-98	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	3e-13	LOB domain-containing protein 4