PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G01480.4
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 493aa    MW: 53630.1 Da    PI: 7.7335
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G01480.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.2e-17168217155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  OPUNC05G01480.4 168 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 217
                      78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16168226IPR016177DNA-binding domain
PfamPF008475.7E-9168217IPR001471AP2/ERF domain
SMARTSM003802.4E-32169231IPR001471AP2/ERF domain
CDDcd000186.66E-11169227No hitNo description
PROSITE profilePS5103217.596169225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-17169226IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-6260304IPR016177DNA-binding domain
CDDcd000183.49E-12260305No hitNo description
SMARTSM003804.2E-13261309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MELDLNNVAE GVPEKQETAE RSDSGTSESS VLNAEASGAP AAAPAEEGSS STPPPPPAVL  60
EFSILRSSAS ASGENDADDD EEEATPSPPP LHHHHQLVTR ELFPSAAPSP RPAPQHWAEL  120
GFLRPDPTRP HPDIRVLAHA PPPAPPPPPQ PQPQAAKKSR RGPRSRSSQY RGVTFYRRTG  180
RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVEA DINFNLSDYE EDMKQMKSLS  240
KEEFVHVLRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKAYDKAA IKCNGREAVT  300
NFEPSTYDGE LPTDAAAQGA DVDLNLSISQ PAASQQSPKR DSTLGLQIHH GSFEGSEFKR  360
AKATPSELAS RPHRFPLLTE HPPIWTAQPH PLFPNNEDAS RSSDHQKRKP SEGVAVPSWA  420
WKQVSHHHPA PPHTLPLPFF SSSSPPSSSA AASSGFSKAA TTAAAQHSAT LRFDPTAPSS  480
SSSSRHHHPH HHH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8283460.0CT828346.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA215G24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639330.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotB8AXC30.0AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A0E0KXX80.0A0A0E0KXX8_ORYPU; Uncharacterized protein
STRINGOPUNC05G01480.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.25e-84related to AP2.7