PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G00970.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 262aa    MW: 29431 Da    PI: 8.4606
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G00970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.5e-143178148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv  v+++G ++W+  a+  g++Rt+k+c++rw +yl
  OPUNC05G00970.1 31 KGPWTEQEDVQLVWFVRLFGERRWDFLAKVSGLKRTGKSCRLRWVNYL 78
                     79********************************************97 PP
2Myb_DNA-binding513.3e-1684129148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr T++E+ l+++++ q+G++ W++Iar ++ gRt++++k++w++++
  OPUNC05G00970.1  84 RGRITADEERLILHLHSQWGSR-WSRIARSLP-GRTDNEIKNFWRTHM 129
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0822678IPR017930Myb domain
SuperFamilySSF466892.49E-2728125IPR009057Homeodomain-like
SMARTSM007171.8E-123080IPR001005SANT/Myb domain
PfamPF002496.3E-133178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-193285IPR009057Homeodomain-like
CDDcd001677.56E-93378No hitNo description
PROSITE profilePS5129422.43179133IPR017930Myb domain
SMARTSM007177.0E-1583131IPR001005SANT/Myb domain
PfamPF002499.1E-1484128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2386131IPR009057Homeodomain-like
CDDcd001677.60E-1088129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVGKKTAMAK EEMKKNIDDE VSGGSGGRMR KGPWTEQEDV QLVWFVRLFG ERRWDFLAKV  60
SGLKRTGKSC RLRWVNYLHP GLKRGRITAD EERLILHLHS QWGSRWSRIA RSLPGRTDNE  120
IKNFWRTHMR KMAHDAKKKN TPPPVTSSGS SLSSSSLTSS CSAATATTAT TTTTTRAGDD  180
EAVDQLVAAT TPASQHQQQM DYTMDQLWND IAAAEEADTS YDAAAAAAMT SPPSPVWEFC  240
TDYSLWRIDD EEYYKKMLDA SQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25311314103MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-253113158157MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-253113158157MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-25311314103C-Myb DNA-Binding Domain
1msf_C1e-25311314103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0939211e-115AC093921.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0041A22, complete sequence.
GenBankAC1085041e-115AC108504.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1654_B10, complete sequence.
GenBankAK0992231e-115AK099223.1 Oryza sativa Japonica Group cDNA clone:J013091O17, full insert sequence.
GenBankAK1116341e-115AK111634.1 Oryza sativa Japonica Group cDNA clone:J013119H17, full insert sequence.
GenBankAP0149611e-115AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-115CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639553.11e-100transcription factor MYB48
SwissprotQ4JL764e-68MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A0E0KXR00.0A0A0E0KXR0_ORYPU; Uncharacterized protein
STRINGOPUNC05G00970.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-61myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]