PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC05G00680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 1381aa MW: 157033 Da PI: 8.0472 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 349.9 | 4e-107 | 355 | 720 | 1 | 366 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+av+++d +a++l++++++++spdgd++qRla+y++ +L+arla+ +s++y++l +++ts ++ l+a++l+ +sP+ + s OPUNC05G00680.1 355 LRSLLIHCAQAVAADDRIMASELVKKIRQHSSPDGDSNQRLAFYLVDGLEARLAGIGSQVYRKLMARRTS---AENLLKAYSLYLSASPFERAS 445 689*************************************************************999999...89999**************** PP GRAS 95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 + aNq+Il+a +g+ ++vHi+ f+i G+QWp+L+q +a+ ++gpp+lRiTg++ p++g e leetg+rLa++A+ ++vpf+++ +a+ OPUNC05G00680.1 446 FAYANQTILDASKGQqpRKVHIVHFGICTGFQWPSLIQRFANEEGGPPKLRITGIDMPHPGfhPCEILEETGKRLADYANLFKVPFQYQG-IAS 538 ***************999****************************************99999999************************.7** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 r+e++++e+L+++++E+l+Vn+++++++l de vs++s+rd+vLk+++ ++P+v+++ + +++s+ F +rf e l +ys+lfd+++a++pr+ OPUNC05G00680.1 539 RWETVQIEDLNIDKDEVLIVNCMFRMKNLGDEMVSMNSARDRVLKTMRMVNPRVFILGIVNGSYSSPFFITRFKEVLFHYSSLFDMIDANVPRD 632 ********************************************************************************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 +e+r+++Er l+g+e+ n++acegaer+er e++++W++r +aGFk +p++ + k++ + + ++ + + +e+ g+l++gWk+r+ OPUNC05G00680.1 633 NEARKMIERGLFGQEALNIIACEGAERTERPESYKQWQARCLKAGFKHLPVDPATLKEIINMKKGIYHEDFVADEDGGWLLQGWKGRK 720 *******************************************************************999***************996 PP | |||||||
2 | GRAS | 368.8 | 7.4e-113 | 1010 | 1379 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 + lL++cA+a++s+++ a++lL +++++asp+gd qRla +f+ +L+arla+++s++y++l +++ts + + l+a++l++ ++P+ + OPUNC05G00680.1 1010 RVLLIQCAQAIASNNHPFASELLRKIRHHASPHGDGSQRLANCFADGLEARLAGTGSQMYEKLMANQTS---TRDMLKAYHLYVVACPFEMV 1098 669************************************************************999999...899***************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 ++ N++I +a+eg+ ++HiiDf+i G+QWp+L+q La++++gpp+lRiTgv+ p++g +e++eetg+rLa++A+ + vpf+++ ++ OPUNC05G00680.1 1099 TYYFSNKTIIDALEGKPKLHIIDFGILFGFQWPCLIQRLAKQEGGPPKLRITGVDVPQPGfrPHERIEETGKRLAEYANMFSVPFQYHG-IS 1189 ***********************************************************9*****************************.7* PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 +r+e++ +e+L+++++E+l++n++ ++ +l de+ +++s+rd+vL+++k+++P+v+++ + +ns+ Fl+rf e l +ys+lfd+l++++ OPUNC05G00680.1 1190 SRWETICIEDLSIDKDEVLIINCMSRMRKLGDETENIDSARDRVLRMMKRMNPEVLILGVVNGLYNSPFFLTRFREVLFHYSSLFDMLDTNV 1281 ******************************************************************************************** PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 pr++e+ri vE+ l+g+++ nvvacegaer+er e++++W++r+ ++GFk+ p++e + k + +++d + ++e+sg+l++gWk+r + OPUNC05G00680.1 1282 PRNHEARILVEKDLFGNDALNVVACEGAERTERPESYKQWQMRILRVGFKQRPVNEAILKRSVDYKELYHQD-FVIDEDSGWLLQGWKGRII 1372 *************************************************************99999999977.******************* PP GRAS 368 vsvSaWr 374 ++S W+ OPUNC05G00680.1 1373 QALSTWK 1379 ******8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.545 | 329 | 708 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-104 | 355 | 720 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 64.756 | 983 | 1360 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-110 | 1010 | 1379 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1381 aa Download sequence Send to blast |
MVIELPFDNQ YTITETEQPH DGSSSSSQQQ LSLYNYSLSD PQLFSQPTTG SRTYLSGAVT 60 TPGICNDKSN LGQPQLQIGA GVSLEYQRIR SSDALCYISR MMMEDVDERV DPHQGEAALQ 120 AAEKPFYDIL GQVYPPSLNR LALRSANEPD MPDESSSRNN HHNRYHSSHS SFNMLPPSPT 180 PLSPYSYDRS LFLPNQHLVS TPWTSTFGIP GLQIRRGAEE AKRFVPIIDK LVIDLDTDRG 240 LSISKMTTKA KVGDKKRYAI FEVTDQGHLP YTTDLDILEG RNSKHYAITS CEIIRNDMFD 300 RVLLCYGEEN FAEASNLREI MAKQASKNSL NGQTRGSAQR KLRGKKQLKK DAVDLRSLLI 360 HCAQAVAADD RIMASELVKK IRQHSSPDGD SNQRLAFYLV DGLEARLAGI GSQVYRKLMA 420 RRTSAENLLK AYSLYLSASP FERASFAYAN QTILDASKGQ QPRKVHIVHF GICTGFQWPS 480 LIQRFANEEG GPPKLRITGI DMPHPGFHPC EILEETGKRL ADYANLFKVP FQYQGIASRW 540 ETVQIEDLNI DKDEVLIVNC MFRMKNLGDE MVSMNSARDR VLKTMRMVNP RVFILGIVNG 600 SYSSPFFITR FKEVLFHYSS LFDMIDANVP RDNEARKMIE RGLFGQEALN IIACEGAERT 660 ERPESYKQWQ ARCLKAGFKH LPVDPATLKE IINMKKGIYH EDFVADEDGG WLLQGWKGRK 720 SVKKKVTRNN PNINQPDVNK KITNFCFRSL KQCRSSIMDS PEYCQTNSNI TLDYINRILM 780 EEDIYDKISL KKGQDALQAT EKPFYDIIGK AYPSSSKETA ISGDSRADYP DNGSSSYHEQ 840 ACSGSFVSDL LGSWGAHSIT TDWSSEFDRL ALQFRRGVEE AKKFIPNIEK LVDDPEKNCL 900 SACKQTTETT EQKGNHENKI RNHPHVEDVE LMEARNSKHM AISTSETIRD EMFDSILLCN 960 RQLPGEVTHL RGMMAKEASD NPKKFQSKGY GKGQRKPHSK KKQKEAIDLR VLLIQCAQAI 1020 ASNNHPFASE LLRKIRHHAS PHGDGSQRLA NCFADGLEAR LAGTGSQMYE KLMANQTSTR 1080 DMLKAYHLYV VACPFEMVTY YFSNKTIIDA LEGKPKLHII DFGILFGFQW PCLIQRLAKQ 1140 EGGPPKLRIT GVDVPQPGFR PHERIEETGK RLAEYANMFS VPFQYHGISS RWETICIEDL 1200 SIDKDEVLII NCMSRMRKLG DETENIDSAR DRVLRMMKRM NPEVLILGVV NGLYNSPFFL 1260 TRFREVLFHY SSLFDMLDTN VPRNHEARIL VEKDLFGNDA LNVVACEGAE RTERPESYKQ 1320 WQMRILRVGF KQRPVNEAIL KRSVDYKELY HQDFVIDEDS GWLLQGWKGR IIQALSTWKP 1380 R |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-46 | 361 | 1381 | 1 | 381 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015693385.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 9 | ||||
TrEMBL | A0A0E0KXN0 | 0.0 | A0A0E0KXN0_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G00680.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-166 | GRAS family protein |