PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G00680.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 1381aa    MW: 157033 Da    PI: 8.0472
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G00680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.94e-1073557201366
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA+av+++d  +a++l++++++++spdgd++qRla+y++ +L+arla+ +s++y++l +++ts    ++ l+a++l+  +sP+ + s
  OPUNC05G00680.1 355 LRSLLIHCAQAVAADDRIMASELVKKIRQHSSPDGDSNQRLAFYLVDGLEARLAGIGSQVYRKLMARRTS---AENLLKAYSLYLSASPFERAS 445
                      689*************************************************************999999...89999**************** PP

             GRAS  95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                      +  aNq+Il+a +g+  ++vHi+ f+i  G+QWp+L+q +a+ ++gpp+lRiTg++ p++g    e leetg+rLa++A+ ++vpf+++  +a+
  OPUNC05G00680.1 446 FAYANQTILDASKGQqpRKVHIVHFGICTGFQWPSLIQRFANEEGGPPKLRITGIDMPHPGfhPCEILEETGKRLADYANLFKVPFQYQG-IAS 538
                      ***************999****************************************99999999************************.7** PP

             GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                      r+e++++e+L+++++E+l+Vn+++++++l de vs++s+rd+vLk+++ ++P+v+++   + +++s+ F +rf e l +ys+lfd+++a++pr+
  OPUNC05G00680.1 539 RWETVQIEDLNIDKDEVLIVNCMFRMKNLGDEMVSMNSARDRVLKTMRMVNPRVFILGIVNGSYSSPFFITRFKEVLFHYSSLFDMIDANVPRD 632
                      ********************************************************************************************** PP

             GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                      +e+r+++Er l+g+e+ n++acegaer+er e++++W++r  +aGFk +p++  + k++  + + ++ + +  +e+ g+l++gWk+r+
  OPUNC05G00680.1 633 NEARKMIERGLFGQEALNIIACEGAERTERPESYKQWQARCLKAGFKHLPVDPATLKEIINMKKGIYHEDFVADEDGGWLLQGWKGRK 720
                      *******************************************************************999***************996 PP

2GRAS368.87.4e-113101013792374
             GRAS    2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93  
                       + lL++cA+a++s+++  a++lL +++++asp+gd  qRla +f+ +L+arla+++s++y++l +++ts   + + l+a++l++ ++P+  +
  OPUNC05G00680.1 1010 RVLLIQCAQAIASNNHPFASELLRKIRHHASPHGDGSQRLANCFADGLEARLAGTGSQMYEKLMANQTS---TRDMLKAYHLYVVACPFEMV 1098
                       669************************************************************999999...899***************** PP

             GRAS   94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 
                       ++   N++I +a+eg+ ++HiiDf+i  G+QWp+L+q La++++gpp+lRiTgv+ p++g   +e++eetg+rLa++A+ + vpf+++  ++
  OPUNC05G00680.1 1099 TYYFSNKTIIDALEGKPKLHIIDFGILFGFQWPCLIQRLAKQEGGPPKLRITGVDVPQPGfrPHERIEETGKRLAEYANMFSVPFQYHG-IS 1189
                       ***********************************************************9*****************************.7* PP

             GRAS  184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 
                       +r+e++ +e+L+++++E+l++n++ ++ +l de+ +++s+rd+vL+++k+++P+v+++   +  +ns+ Fl+rf e l +ys+lfd+l++++
  OPUNC05G00680.1 1190 SRWETICIEDLSIDKDEVLIINCMSRMRKLGDETENIDSARDRVLRMMKRMNPEVLILGVVNGLYNSPFFLTRFREVLFHYSSLFDMLDTNV 1281
                       ******************************************************************************************** PP

             GRAS  276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 
                       pr++e+ri vE+ l+g+++ nvvacegaer+er e++++W++r+ ++GFk+ p++e + k      + +++d + ++e+sg+l++gWk+r +
  OPUNC05G00680.1 1282 PRNHEARILVEKDLFGNDALNVVACEGAERTERPESYKQWQMRILRVGFKQRPVNEAILKRSVDYKELYHQD-FVIDEDSGWLLQGWKGRII 1372
                       *************************************************************99999999977.******************* PP

             GRAS  368 vsvSaWr 374 
                        ++S W+
  OPUNC05G00680.1 1373 QALSTWK 1379
                       ******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.545329708IPR005202Transcription factor GRAS
PfamPF035141.4E-104355720IPR005202Transcription factor GRAS
PROSITE profilePS5098564.7569831360IPR005202Transcription factor GRAS
PfamPF035142.5E-11010101379IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 1381 aa     Download sequence    Send to blast
MVIELPFDNQ YTITETEQPH DGSSSSSQQQ LSLYNYSLSD PQLFSQPTTG SRTYLSGAVT  60
TPGICNDKSN LGQPQLQIGA GVSLEYQRIR SSDALCYISR MMMEDVDERV DPHQGEAALQ  120
AAEKPFYDIL GQVYPPSLNR LALRSANEPD MPDESSSRNN HHNRYHSSHS SFNMLPPSPT  180
PLSPYSYDRS LFLPNQHLVS TPWTSTFGIP GLQIRRGAEE AKRFVPIIDK LVIDLDTDRG  240
LSISKMTTKA KVGDKKRYAI FEVTDQGHLP YTTDLDILEG RNSKHYAITS CEIIRNDMFD  300
RVLLCYGEEN FAEASNLREI MAKQASKNSL NGQTRGSAQR KLRGKKQLKK DAVDLRSLLI  360
HCAQAVAADD RIMASELVKK IRQHSSPDGD SNQRLAFYLV DGLEARLAGI GSQVYRKLMA  420
RRTSAENLLK AYSLYLSASP FERASFAYAN QTILDASKGQ QPRKVHIVHF GICTGFQWPS  480
LIQRFANEEG GPPKLRITGI DMPHPGFHPC EILEETGKRL ADYANLFKVP FQYQGIASRW  540
ETVQIEDLNI DKDEVLIVNC MFRMKNLGDE MVSMNSARDR VLKTMRMVNP RVFILGIVNG  600
SYSSPFFITR FKEVLFHYSS LFDMIDANVP RDNEARKMIE RGLFGQEALN IIACEGAERT  660
ERPESYKQWQ ARCLKAGFKH LPVDPATLKE IINMKKGIYH EDFVADEDGG WLLQGWKGRK  720
SVKKKVTRNN PNINQPDVNK KITNFCFRSL KQCRSSIMDS PEYCQTNSNI TLDYINRILM  780
EEDIYDKISL KKGQDALQAT EKPFYDIIGK AYPSSSKETA ISGDSRADYP DNGSSSYHEQ  840
ACSGSFVSDL LGSWGAHSIT TDWSSEFDRL ALQFRRGVEE AKKFIPNIEK LVDDPEKNCL  900
SACKQTTETT EQKGNHENKI RNHPHVEDVE LMEARNSKHM AISTSETIRD EMFDSILLCN  960
RQLPGEVTHL RGMMAKEASD NPKKFQSKGY GKGQRKPHSK KKQKEAIDLR VLLIQCAQAI  1020
ASNNHPFASE LLRKIRHHAS PHGDGSQRLA NCFADGLEAR LAGTGSQMYE KLMANQTSTR  1080
DMLKAYHLYV VACPFEMVTY YFSNKTIIDA LEGKPKLHII DFGILFGFQW PCLIQRLAKQ  1140
EGGPPKLRIT GVDVPQPGFR PHERIEETGK RLAEYANMFS VPFQYHGISS RWETICIEDL  1200
SIDKDEVLII NCMSRMRKLG DETENIDSAR DRVLRMMKRM NPEVLILGVV NGLYNSPFFL  1260
TRFREVLFHY SSLFDMLDTN VPRNHEARIL VEKDLFGNDA LNVVACEGAE RTERPESYKQ  1320
WQMRILRVGF KQRPVNEAIL KRSVDYKELY HQDFVIDEDS GWLLQGWKGR IIQALSTWKP  1380
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4636113811381Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693385.10.0PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 9
TrEMBLA0A0E0KXN00.0A0A0E0KXN0_ORYPU; Uncharacterized protein
STRINGOPUNC05G00680.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-166GRAS family protein