PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G28460.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 374aa MW: 41486 Da PI: 4.3537 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.7 | 6.9e-51 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd el v+yLk+k+ gk+l++ ++++e+d+yk+ PwdLp k +++++++ewyfF++rd+ky++g+r+nr+t++gyWkatgkd++v OPUNC04G28460.5 6 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAVSELDLYKFAPWDLPeKsSLQSKDREWYFFCPRDRKYSSGSRTNRSTEAGYWKATGKDRPV 98 79****************************.89**************95357788999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle OPUNC04G28460.5 99 IY-NSQTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 134 **.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.09E-60 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.488 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-26 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005768 | Cellular Component | endosome | ||||
GO:0005802 | Cellular Component | trans-Golgi network | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MAKTSLPPGF RFHPTDVELT VYYLKRKLLG KHLRCNAVSE LDLYKFAPWD LPEKSSLQSK 60 DREWYFFCPR DRKYSSGSRT NRSTEAGYWK ATGKDRPVIY NSQTVGMKRT LVFHLGKPPR 120 GDRTDWVMYE YRLEDKELSA SGVKLDACVL CKIFQKSGPG PKIGEQYGAP FNEDDWNEAN 180 GELSSFAFSV PPYALESSNG RLNTAGQQLA VSDNIGSSLD PCSETNDKIA VGGVCCGTTS 240 PGVPFDSIHT QQLAEIISCF STDLLNSFGR DGSLPDSTAD YGNDNEVSSD GGEAIFNELD 300 ELDSQSDESI SNHCDSCGED LIPPTLEVLK TEQYLELNDL SFSLADDPDP CNLLLTTNLS 360 DQNHLELETR FDPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-52 | 2 | 157 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068153 | 0.0 | AK068153.1 Oryza sativa Japonica Group cDNA clone:J013131L02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001169920.1 | 0.0 | uncharacterized protein LOC100383817 | ||||
Refseq | XP_008668454.1 | 0.0 | ras-related protein18A1 isoform X1 | ||||
TrEMBL | A0A0E0KXC1 | 0.0 | A0A0E0KXC1_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G28460.1 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 3e-82 | NAC domain containing protein 82 |