PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G28460.4
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 375aa    MW: 41643.2 Da    PI: 4.4551
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G28460.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.9e-5161341129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtd el v+yLk+k+ gk+l++ ++++e+d+yk+ PwdLp k +++++++ewyfF++rd+ky++g+r+nr+t++gyWkatgkd++v
  OPUNC04G28460.4   6 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAVSELDLYKFAPWDLPeKsSLQSKDREWYFFCPRDRKYSSGSRTNRSTEAGYWKATGKDRPV 98 
                      79****************************.89**************95357788999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +  ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle
  OPUNC04G28460.4  99 IY-NSQTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 134
                      **.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-603156IPR003441NAC domain
PROSITE profilePS5100556.4886156IPR003441NAC domain
PfamPF023651.5E-267133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005768Cellular Componentendosome
GO:0005802Cellular Componenttrans-Golgi network
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MAKTSLPPGF RFHPTDVELT VYYLKRKLLG KHLRCNAVSE LDLYKFAPWD LPEKSSLQSK  60
DREWYFFCPR DRKYSSGSRT NRSTEAGYWK ATGKDRPVIY NSQTVGMKRT LVFHLGKPPR  120
GDRTDWVMYE YRLEDKELSA SGVKLDACVL CKIFQKSGPG PKIGEQYGAP FNEDDWNEAN  180
GELSSFAFSV PPYALESSNG RLNTAGQQLA VSDNIGSSLD PCSETNDKIA VGGVCCGTTS  240
PGVPFDSIHT QQLAEIISCF STDLLNSFGR DGSLPDSTAD YGNDNEVSSD GGEAIFNELD  300
ELDSQSDESI SNHCDSCGED LIPPTLEVLK TEQYLELNDL SFSLADDPDP CNLLLTTNLS  360
DQNHLELETR KVVRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-52215711169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0681530.0AK068153.1 Oryza sativa Japonica Group cDNA clone:J013131L02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169920.11e-179uncharacterized protein LOC100383817
RefseqXP_008668454.11e-179ras-related protein18A1 isoform X1
RefseqXP_025823524.11e-180NAC domain-containing protein 82-like
RefseqXP_025823525.11e-180NAC domain-containing protein 82-like
RefseqXP_025823526.11e-180NAC domain-containing protein 82-like
RefseqXP_025823527.11e-180NAC domain-containing protein 82-like
TrEMBLA0A0E0KXC00.0A0A0E0KXC0_ORYPU; Uncharacterized protein
STRINGOPUNC04G28460.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.44e-82NAC domain containing protein 82