PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G28460.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 836aa    MW: 94109.6 Da    PI: 6.2836
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G28460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.72.8e-504405681129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtd el v+yLk+k+ gk+l++ ++++e+d+yk+ PwdLp k +++++++ewyfF++rd+ky++g+r+nr+t++gyWkatgkd++v
  OPUNC04G28460.1 440 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAVSELDLYKFAPWDLPeKsSLQSKDREWYFFCPRDRKYSSGSRTNRSTEAGYWKATGKDRPV 532
                      79****************************.89**************95357788999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +  ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle
  OPUNC04G28460.1 533 IY-NSQTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 568
                      **.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030163.6E-4253340IPR004263Exostosin-like
SuperFamilySSF1019419.42E-61432590IPR003441NAC domain
PROSITE profilePS5100556.488440590IPR003441NAC domain
PfamPF023656.2E-26441567IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005768Cellular Componentendosome
GO:0005802Cellular Componenttrans-Golgi network
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MRGSHQPLCT RAHQATALLL VAATFFLTRL LDRLPLSDPP PPCAAPYSPW PHRDLRIYVY  60
AEDEVDGLRA LLRGRNDDVT AATCIKGQWG TQVKIHQLLL SSRFRTFDKD EADLFFVPTY  120
VKCVRMTGKL NDKEINQTYV KVVLSQMPYF RRSGGRDHIF VFPSGAGAHL FRSWATFLNR  180
SIILTPEGDR TDKRGISAFN TWKDIIIPGN VDDSMVKPDR LAVKPIPLTK RKYLANFLGR  240
AQGKVGRLQL VKLAKQYPDK LESPELKLSG PDKLGRIDYF KHLRNAKFCL APRGESSWTL  300
RFYESFFVEC VPVILSDEVE LPFQNVIDYT EVSIKWPASK IGPGLLEYLE SIPDGRVEEM  360
IGRGREMRCL WVYAADTERC SAMSAIMWEL QRKVRRFHQS AETFWLHNRS IVNRDLVEFH  420
EWRTPCRQRS VLLSMAKTSL PPGFRFHPTD VELTVYYLKR KLLGKHLRCN AVSELDLYKF  480
APWDLPEKSS LQSKDREWYF FCPRDRKYSS GSRTNRSTEA GYWKATGKDR PVIYNSQTVG  540
MKRTLVFHLG KPPRGDRTDW VMYEYRLEDK ELSASGVKLD ACVLCKIFQK SGPGPKIGEQ  600
YGAPFNEDDW NEANGELSSF AFSVPPYALE SSNGRLNTAG QQLAVSDNIG SSLDPCSETN  660
DKIAVGGVCC GTTSPGVPFD SIHTQQLAEI ISCFSTDLLN SFGRDGSLPD STADYGNDNE  720
VSSDGGEAIF NELDELDSQS DESISNHCDS CGEDLIPPTL EVLKTEQYLE LNDLSFSLAD  780
DPDPCNLLLT TNLSDQNHLE LETRCEQGSL VDICNTTNAT LSNAACSAST VGDHVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4943659111169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646460.0AK064646.1 Oryza sativa Japonica Group cDNA clone:002-114-D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697732.10.0PREDICTED: probable glucuronosyltransferase Os03g0107900
TrEMBLA0A0E0KXB70.0A0A0E0KXB7_ORYPU; Uncharacterized protein
STRINGOPUNC04G28460.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP993277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.46e-77NAC domain containing protein 82