PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G27620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YC | ||||||||
Protein Properties | Length: 124aa MW: 13289.2 Da PI: 7.6836 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 94.5 | 8.8e-30 | 22 | 115 | 19 | 99 |
NF-YC 19 helPlarikkilkade.d....v........kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 h+lPlarikki+k d v +mis eaPv++skacelfi elt r+w + + krrt++k d+aaav++td fdflvd+v d OPUNC04G27620.1 22 HALPLARIKKIMKRSAgDssgsVivdggggaRMISGEAPVVFSKACELFIAELTRRAWAATLDGKRRTMHKEDVAAAVQNTDLFDFLVDVVMAD 115 89***********7532122331223333339**********************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.68E-23 | 18 | 108 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 5.2E-31 | 19 | 100 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.6E-14 | 24 | 99 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MRQARPYSAM FAGGVSARTG PHALPLARIK KIMKRSAGDS SGSVIVDGGG GARMISGEAP 60 VVFSKACELF IAELTRRAWA ATLDGKRRTM HKEDVAAAVQ NTDLFDFLVD VVMADLGHDD 120 DHMD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-30 | 22 | 112 | 16 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL732345 | 1e-150 | AL732345.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete sequence. | |||
GenBank | CP012612 | 1e-150 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006653894.1 | 1e-70 | PREDICTED: nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q8LCG7 | 7e-29 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A0E0KWZ9 | 9e-85 | A0A0E0KWZ9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G27620.1 | 2e-85 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11658 | 33 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 7e-30 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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