PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G27290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 212aa MW: 22365.7 Da PI: 7.2072 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 113.9 | 6.9e-36 | 54 | 109 | 2 | 57 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrk 57 k+++l+cprC stntkfCyynnys+sqPr+fC+aCrryWt+GG+lr+vPvGg++r+ OPUNC04G27290.1 54 KKQQLECPRCRSTNTKFCYYNNYSTSQPRHFCRACRRYWTHGGTLRDVPVGGASRR 109 6899*************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 4.4E-32 | 56 | 109 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-21 | 58 | 102 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.736 | 58 | 112 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 60 | 96 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MAPAVASSPS VVLSAAATAS NKRPADSDAV PLTDSSPPPQ GDQEVSPRTG QQEKKQQLEC 60 PRCRSTNTKF CYYNNYSTSQ PRHFCRACRR YWTHGGTLRD VPVGGASRRG GGKRRRVSAD 120 ADPSSASPPP TTSTDAYAEL PAGFPFLSDG AFLPSFGLAG VAPAAFSWQS AIPDLYNCGL 180 APWDDGTAVT GAAWDNFTDI AGLDLSWPPP GN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 116 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107524 | 0.0 | AK107524.1 Oryza sativa Japonica Group cDNA clone:002-129-F12, full insert sequence. | |||
GenBank | AL606668 | 0.0 | AL606668.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10, complete sequence. | |||
GenBank | AL732349 | 0.0 | AL732349.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0402C08, complete sequence. | |||
GenBank | AL732353 | 0.0 | AL732353.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY461803 | 0.0 | AY461803.1 Oryza sativa (japonica cultivar-group) Dof28 mRNA, complete cds. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448779.1 | 4e-67 | dof zinc finger protein DOF5.8 | ||||
TrEMBL | A0A0E0KWV1 | 1e-151 | A0A0E0KWV1_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G27290.1 | 1e-152 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14047 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 1e-27 | Dof family protein |