PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G26690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 838aa MW: 92861.1 Da PI: 6.2879 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.4 | 1.2e-22 | 134 | 235 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d + +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ OPUNC04G26690.1 134 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 223 99***********************9*****86555544..8************************************************..88 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ OPUNC04G26690.1 224 EKNQLLLGIRRA 235 99999****997 PP | |||||||
2 | Auxin_resp | 112.6 | 3.8e-37 | 260 | 343 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k OPUNC04G26690.1 260 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 343 79*******************************986599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.11E-48 | 119 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-41 | 126 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.60E-21 | 133 | 234 | No hit | No description |
Pfam | PF02362 | 7.9E-21 | 134 | 235 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.224 | 134 | 236 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-23 | 134 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-32 | 260 | 343 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.5E-7 | 712 | 803 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.37E-7 | 713 | 794 | No hit | No description |
PROSITE profile | PS51745 | 24.037 | 719 | 803 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 838 aa Download sequence Send to blast |
MSSSSAASIG PPPPPPPAPP EEEKKCLNSE LWHACAGPLV CLPTVGTRVV YFPQGHSEQV 60 AASTNKEVEG HIPNYPNLPA QLICQLHDVT MHADVETDEV YAQMTLQPLN PQEQNDAYLP 120 AEMGIMSKQP TNYFCKTLTA SDTSTHGGFS VPRRAAERVF PPLDFTQQPP AQELIARDIH 180 DIEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNEKNQLLL GIRRASRPQT 240 VMPSSVLSSD SMHIGLLAAA AHAAATNSRF TIFYNPRASP SEFVIPLSKY IKAVFHTRIS 300 VGMRFRMLFE TEESSVRRYM GTITEVSDAD PVRWPSSYWR SVKVGWDEST AGERPPRVSL 360 WEIEPLTTFP MYPSLFPLRV KHPWYSGVAS LHDDSNALMW LRGVAGEGGF QSLNFQSPGI 420 GSWGQQRLHP SLLSNDHDQY QAVVAAAAAA SQSGGYLKQQ FLHLQQPMQS PQEHCNLNPL 480 LQQQILQQAG QQQIISPEAQ NIQTMLSPSA IQQQLQQLQQ MQQVQNDQKQ KIQPDQSYQV 540 PSSAVLPSPT SLPSHLREKF GFSDPNANSS SFITSSSSDN MLDSSFLQGS SKAVDLSRFN 600 QPVASEQQQQ QQQAWKQKFM GSQSVSFGGS VLHNSPTSKD GSIENKIGRD VQNQSLFSPQ 660 VDSSSLLYNM VPNLTSNVAD GNLSTIPSGS TYLQNAMYAC LDDSSGLLQN TGENDPTTRT 720 FVKVYKSGSV GRSLDITRFS NYAELREELG QMFGIKGQLD DPDRSGWQLV FVDRENDVLL 780 LGDDPWESFV NSVWYIKILS PEDVHKMGKQ GNDPRGFQED SAAHGGTLAL DNARLQKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-161 | 23 | 364 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071455 | 0.0 | AK071455.1 Oryza sativa Japonica Group cDNA clone:J023093B04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691612.1 | 0.0 | PREDICTED: auxin response factor 12, partial | ||||
Swissprot | Q0J951 | 0.0 | ARFL_ORYSJ; Auxin response factor 12 | ||||
TrEMBL | A0A0E0KWM2 | 0.0 | A0A0E0KWM2_ORYPU; Auxin response factor | ||||
STRING | OPUNC04G26690.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5850 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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