PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G26100.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1034aa    MW: 114374 Da    PI: 7.3065
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G26100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.7e-23222323199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F   +++
  OPUNC04G26100.1 222 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI--RDE 312
                      89*********************999*****9555555.49************************************************..456 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      + +l+++v+r+
  OPUNC04G26100.1 313 KSQLLLGVRRA 323
                      77789999997 PP
2Auxin_resp117.31.2e-38348430183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaas++s F+++YnPr+s+s Fv++v++++ka++++ svGmRf m+fete+ss+rr++Gtvvg+sd+dp+rWpnSkWr+L+
  OPUNC04G26100.1 348 AAHAASSGSSFTIYYNPRTSPSPFVIPVARYNKATYMQPSVGMRFAMMFETEESSKRRYTGTVVGISDYDPMRWPNSKWRNLQ 430
                      79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.19E-45212351IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-40215336IPR015300DNA-binding pseudobarrel domain
CDDcd100173.03E-20221322No hitNo description
SMARTSM010191.3E-22222324IPR003340B3 DNA binding domain
PROSITE profilePS5086312.689222324IPR003340B3 DNA binding domain
PfamPF023621.2E-20222323IPR003340B3 DNA binding domain
PfamPF065075.3E-34348430IPR010525Auxin response factor
PfamPF023092.3E-108811018IPR033389AUX/IAA domain
SuperFamilySSF542778.5E-99281010No hitNo description
PROSITE profilePS5174525.5019311015IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1034 aa     Download sequence    Send to blast
MRNHGFSPRK VGIFRPKQPR SAASHCSSRR ERLRSQQRER EEAKGAKGRG STTTLLRIIA  60
IYYCPHPTTP IRHHCIPPPQ PLLLPPREKA KTGVLRNAAA LLDEMQLMGE TQGAKKVINS  120
ELWHACAGPL VCLPQRGSLV YYFPQGHSEQ VAATTRKIPN SRIPNYPNLP SQLLCQVHNI  180
TLHADKDTDE VYAQMTLQPE TDVFPIPTLG AYTKSKHPTE YFCKNLTASD TSTHGGFSVP  240
RRAAEKLFPQ LDYSMQPPNQ ELIVRDLHDN MWTFRHIYRG QPKRHLLTTG WSLFVGAKRL  300
KAGDSVLFIR DEKSQLLLGV RRATRQQTTL SSSVLSTDSM HIGVLAAAAH AASSGSSFTI  360
YYNPRTSPSP FVIPVARYNK ATYMQPSVGM RFAMMFETEE SSKRRYTGTV VGISDYDPMR  420
WPNSKWRNLQ VEWDEHGYGE RPERVSIWDI ETPENTLVFP SSTLNSKRQC LPGYGVSVPG  480
LEIGSANMSS FPRAQGNPYG SLQHIPAVGS ELAIMLLNQS GQTLGSPLSF HQSSYSSIIQ  540
NVKQNYIPPL TVSTSACSTK QESMPSDDAQ HQFHMANMQN GDLESSEVQP VIDSISDSKL  600
NVTSRDPRNT DSYPIRSISE QNSKGEPRGK TRRSKKGLSH KAVSEKSDLS SAPSWICDNQ  660
QVGLESKLVG CDEQVNCGNI EDSSGALTQG NFAGQPHGHQ VEQNGVLSPP KVESSKSPDG  720
GKSVNSFPNQ VCFSQFIDGL DWMTQPSYYQ DSNVIQPADA SENIFSSSAD IPPPMIADTM  780
ETFQASCLSD CLPNSIQEFI SSPDLNSLTF LSPEMQNLEV QLQHDGSNLP STSNSFVQMS  840
FSEESGNQSA NLSGLHMESA HRSMNTTSCS QPMSTGGFDA GMHSKLPRLK ESQIMSLPEI  900
HTNSMGTSAC SMGATEYSLD RSAKPMKPPV RTYTKVQKQG SVGRSIDVTG FRNYHELRSA  960
IACMFGLQGK LEHPGSSEWK LVYVDYENDV LLVGDDPWEE FINCVRCIRI LSPSEVQQMS  1020
ENGMHVLNDC IQAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.08845310390Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712920.0AB071292.1 Oryza sativa OsMP mRNA for Arabidopsis Monopteros-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881052.10.0auxin response factor 11-like isoform X1
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLA0A0E0KWE20.0A0A0E0KWE2_ORYPU; Auxin response factor
STRINGOPUNC04G26100.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]