PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G25430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 140aa MW: 15107.8 Da PI: 4.7372 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.4 | 4.8e-20 | 3 | 52 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr++ +g+Wv+eIr+p +r++lg++gtae+Aa+a+++a++ + g OPUNC04G25430.1 3 KYKGVRQRN-WGSWVSEIRHP-----LlkTRIWLGTYGTAEDAARAYDEAARLMSG 52 8*****998.**********8.....334**********************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.72E-30 | 2 | 62 | No hit | No description |
SMART | SM00380 | 6.4E-37 | 3 | 66 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.666 | 3 | 60 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-32 | 3 | 61 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-20 | 3 | 62 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-12 | 3 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 4 | 15 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 26 | 42 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MAKYKGVRQR NWGSWVSEIR HPLLKTRIWL GTYGTAEDAA RAYDEAARLM SGPAARTNFP 60 LSSSGGNTRS CLSPTLRARL EKCCGTGSTS QAQQGVVADP DNDGAAAEAT MGVDDGEEYV 120 EEMIQELTFY GSIEIVQPSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-16 | 4 | 66 | 6 | 69 | ATERF1 |
3gcc_A | 8e-16 | 4 | 66 | 6 | 69 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606446 | 1e-148 | AL606446.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F16, complete sequence. | |||
GenBank | AL606685 | 1e-148 | AL606685.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071I13, complete sequence. | |||
GenBank | AP014960 | 1e-148 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-148 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855136 | 1e-148 | CR855136.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0147J19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635341.1 | 1e-84 | ethylene-responsive transcription factor ERF003 | ||||
Swissprot | Q94AW5 | 4e-41 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A0E0KW55 | 1e-99 | A0A0E0KW55_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G25430.1 | 1e-100 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1418 | 35 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 4e-32 | ERF family protein |
Publications ? help Back to Top | |||
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