PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G24930.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 463aa    MW: 48760.8 Da    PI: 7.007
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G24930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17108157155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  OPUNC04G24930.1 108 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 157
                      78*******************......55************************997 PP
2AP246.31e-14200250155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  OPUNC04G24930.1 200 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 250
                      89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-9108157IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-16108166IPR016177DNA-binding domain
PROSITE profilePS5103217.701109165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-17109165IPR001471AP2/ERF domain
SMARTSM003801.8E-31109171IPR001471AP2/ERF domain
PfamPF008471.0E-10200250IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-18200260IPR016177DNA-binding domain
CDDcd000181.83E-25200260No hitNo description
Gene3DG3DSA:3.30.730.102.4E-17201258IPR001471AP2/ERF domain
SMARTSM003803.0E-33201264IPR001471AP2/ERF domain
PROSITE profilePS5103216.489201258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MWDLNDSPAA EVAPPPVSPS ADDSGASSSS AAAVVEIPDD ADDDSAAVVV TRQFFPPAVP  60
GGDPAPGNAR AGWLRLAGAA PPVAAAGGAA AAAAVSKKSR RGPRSRSSQY RGVTFYRRTG  120
RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVEA DINFSLEDYE DDLKQMSNLT  180
KEEFVHVLRR QSTGFPRGSS KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDTEEEAARA  240
YDRAAIKCNG KDAVTNFDPS IYAGEFEPPA AATGDAAEHN LDLSLGSSAG SKRGNLDGGG  300
DDEITGGGGG GGGVVGSDQR VPMAFDLDWQ TAAARSTKAK FDQNSNHPQM PPVLQVTHLP  360
FSPRNHQFLS NGEPGTAGGL SLTIGAGMGG HWPSQQQQGW VNAGGTSWPL PPHPHQHPPP  420
PTNAAAAATA TAAAASSRFP PYIATQASTW LQKNGFHSLT RPT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822800.0FO082280.1 Oryza rufipogon (W1943) shattering abortion 1(SHAT1) gene: OR_W1943_CDS_SHAT1, PCR product.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636848.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8AVJ90.0APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A0E0KVZ90.0A0A0E0KVZ9_ORYPU; Uncharacterized protein
STRINGOPUNC04G24930.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-90AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]