PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G23070.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 320aa    MW: 34683.7 Da    PI: 6.8639
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G23070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.92.4e-50111581128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                      lppGfrFhP+deelvv+yL +k+++        +    ++ +vd++k+ePw+Lp +++ + +ewyfFs +d+kyatg+r+nrat+sgyWkatgk
  OPUNC04G23070.1  11 LPPGFRFHPRDEELVVDYLYHKLSSAGggdggeFYGGVAMVDVDLNKCEPWELPDAARVGATEWYFFSLHDRKYATGQRTNRATRSGYWKATGK 104
                      79*********************99987766543332369**************8888899********************************* PP

              NAM  89 dkevlsk........kgel........vglkktLvfykgrapkgektdWvmheyrl 128
                      d++++++                    vg++ktLvfy+grap+g+kt+Wvmhe+r+
  OPUNC04G23070.1 105 DRAIVTSrrrrraatA--GeatgggavVGMRKTLVFYQGRAPRGTKTEWVMHEFRV 158
                      *****98666555550..055566666***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-553189IPR003441NAC domain
PROSITE profilePS5100553.30111189IPR003441NAC domain
PfamPF023654.0E-2612158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSLISMMEAN LPPGFRFHPR DEELVVDYLY HKLSSAGGGD GGEFYGGVAM VDVDLNKCEP  60
WELPDAARVG ATEWYFFSLH DRKYATGQRT NRATRSGYWK ATGKDRAIVT SRRRRRAATA  120
GEATGGGAVV GMRKTLVFYQ GRAPRGTKTE WVMHEFRVDG HAVADHPSSS TTSSNLLKED  180
WVLCRVFYKS RTATPRPVVS GEAGVSLSSE LSLPPPPLTV APAVVDAYLA LDRAPAADTG  240
GGSYYEEDSS GYHHHRPAPS AALPFKDLTD FRDLLSNMVQ GGGGSGAAAA KTEGFHLGWS  300
EEEAGYVQQS AMASQAWNPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-46619312169NO APICAL MERISTEM PROTEIN
1ut4_B1e-46619312169NO APICAL MERISTEM PROTEIN
1ut7_A1e-46619312169NO APICAL MERISTEM PROTEIN
1ut7_B1e-46619312169NO APICAL MERISTEM PROTEIN
3swm_A1e-46619315172NAC domain-containing protein 19
3swm_B1e-46619315172NAC domain-containing protein 19
3swm_C1e-46619315172NAC domain-containing protein 19
3swm_D1e-46619315172NAC domain-containing protein 19
3swp_A1e-46619315172NAC domain-containing protein 19
3swp_B1e-46619315172NAC domain-containing protein 19
3swp_C1e-46619315172NAC domain-containing protein 19
3swp_D1e-46619315172NAC domain-containing protein 19
4dul_A1e-46619312169NAC domain-containing protein 19
4dul_B1e-46619312169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376680.0CT837668.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633392.11e-152NAC domain-containing protein 21/22
TrEMBLA0A0E0KVB00.0A0A0E0KVB0_ORYPU; Uncharacterized protein
STRINGOPUNC04G23070.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.11e-64NAC family protein