PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC04G22800.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 525aa MW: 58387.1 Da PI: 9.6341

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G22800.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.4	1.4e-24	202	285	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y +YA +vGFsvrk k+ +n +r fvCs+eg+r++++ k r+r+etrtgC a++ +k+ ++gk++v++++++HnH+la OPUNC04G22800.1 202 EYYASYAGNVGFSVRKGLWDKTVKN-VARSRVFVCSREGFRSKNEAK-----RPRPETRTGCPARIAIKLVSNGKYRVAEFVEDHNHQLA 285 69**************9999555.599*********98777.....**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.8E-22	202	285	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MATTSTSGDP PAAAGEPTPS SSASAQTRQP TSRISHIVRT YLDLSSNPKK RRAAPKNHPK 60 PTGGGGGQGG PDAVDGKDGG GGGKAAVTPS SAAQSTTTRL LRELGVRVSR YSHEERRDII 120 LRYMQKRSGR QGVKRATAKA PSRQALAERR RRGARGQFLG KEGVKTADKV EEEPEVPPEV 180 IANAGGVPIV GMAFENEEKA YEYYASYAGN VGFSVRKGLW DKTVKNVARS RVFVCSREGF 240 RSKNEAKRPR PETRTGCPAR IAIKLVSNGK YRVAEFVEDH NHQLAAPFDI EMLKSEREFT 300 HEFRHCIFDI EDDQEFDETW NVIIKKYSLK GEEWLNKLYE DRENWALPYN RQIFFGDIKG 360 MLQVETSCVS NEVEKYTGKK KSEVYRHKNA LVANKKQKTR KDMRHPDEAA AGPRDGELNM 420 TPDNGQSEPR NSPNQFLPDQ LMQGHYILGH SYGLGTSENL HNNLNQFGQA SSVPTLQQQA 480 FPGNNQLTQG YPSDMHALQF VGTNPQMEHQ NGDQGQSSIP VWDFL

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MATTSTSGDP PAAAGEPTPS SSASAQTRQP TSRISHIVRT YLDLSSNPKK RRAAPKNHPK  60
PTGGGGGQGG PDAVDGKDGG GGGKAAVTPS SAAQSTTTRL LRELGVRVSR YSHEERRDII  120
LRYMQKRSGR QGVKRATAKA PSRQALAERR RRGARGQFLG KEGVKTADKV EEEPEVPPEV  180
IANAGGVPIV GMAFENEEKA YEYYASYAGN VGFSVRKGLW DKTVKNVARS RVFVCSREGF  240
RSKNEAKRPR PETRTGCPAR IAIKLVSNGK YRVAEFVEDH NHQLAAPFDI EMLKSEREFT  300
HEFRHCIFDI EDDQEFDETW NVIIKKYSLK GEEWLNKLYE DRENWALPYN RQIFFGDIKG  360
MLQVETSCVS NEVEKYTGKK KSEVYRHKNA LVANKKQKTR KDMRHPDEAA AGPRDGELNM  420
TPDNGQSEPR NSPNQFLPDQ LMQGHYILGH SYGLGTSENL HNNLNQFGQA SSVPTLQQQA  480
FPGNNQLTQG YPSDMHALQF VGTNPQMEHQ NGDQGQSSIP VWDFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	246	250	KRPRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK072027	0.0	AK072027.1 Oryza sativa Japonica Group cDNA clone:J013106I23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636013.1	1e-151	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0E0KV76	0.0	A0A0E0KV76_ORYPU; Uncharacterized protein
STRING	OPUNC04G22800.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15013	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-15	FAR1-related sequence 5