PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G22340.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 215aa    MW: 22133.2 Da    PI: 10.0025
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G22340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44e-192272155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++++GVr ++ +gr++AeIrdp     r +r++lg+f+tae Aa+a+++a++ ++g
  OPUNC04G22340.1 22 PRFRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTAEAAARAYDNAALHFRG 72
                     689*******.**********8...2.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.20E-212282No hitNo description
PfamPF008474.9E-132272IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-222381IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-312380IPR001471AP2/ERF domain
SMARTSM003802.1E-362386IPR001471AP2/ERF domain
PROSITE profilePS5103224.2762380IPR001471AP2/ERF domain
PRINTSPR003671.5E-102435IPR001471AP2/ERF domain
PRINTSPR003671.5E-104662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAPRNAAEAD AVAEGAGAGM EPRFRGVRKR PWGRYAAEIR DPARKARVWL GTFDTAEAAA  60
RAYDNAALHF RGPKAKTNFP VAFAHAHAPP PLPKAALAVV SPTSSTVESS SRDTPAAAPV  120
AAAKAQVSAA PSLDLSLGMS AMVAAQPFLF LDPRVAVTVA VAAPVPRRPA VVSVKKEVAR  180
LDEQSDTGSS SSVVDASPAV GVGLDLNLPP PTEEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-211583575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066840.0AL606684.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633875.17e-83ethylene-responsive transcription factor 11
TrEMBLA0A0E0KV081e-146A0A0E0KV08_ORYPU; Uncharacterized protein
STRINGOPUNC04G22340.11e-147(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.17e-20ERF domain protein 11