PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC04G21620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 386aa MW: 41414.2 Da PI: 7.9345 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.2 | 8e-25 | 114 | 158 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ OPUNC04G21620.1 114 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 158 79****************************************996 PP | |||||||
2 | QLQ | 59 | 1.4e-20 | 53 | 88 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ ++L++Q+l+yKyL+a++PvP++Ll++i++ OPUNC04G21620.1 53 PFTAAQYEELEQQALIYKYLVAGVPVPADLLLPIRR 88 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.4E-11 | 52 | 88 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.187 | 53 | 88 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.0E-14 | 53 | 87 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.517 | 114 | 158 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.9E-21 | 115 | 157 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 386 aa Download sequence Send to blast |
MAMPFASLSP AADHRPSSIF PFCRSSPLSA VGEEAQQHMM GARWAAAVAR PPPFTAAQYE 60 ELEQQALIYK YLVAGVPVPA DLLLPIRRGL DSLASRFYHH PVLGYGSYFG KKLDPEPGRC 120 RRTDGKKWRC SKEAAPDSKY CERHMHRGRN RSRKPVEAQL VAPHSQPPAT APAAAVTSTA 180 FQNHSLYPAI ANGGGAGGGG GGGGGGGNAP GSFALGSNTQ LHMDNAASYS TVAGAGNKDF 240 RYSAYGVRPL ADEHSPLITG AMDTSIDNSW RLLPSQTSTF SVSSYPMLGN LSELDQNTIC 300 SLPKADREPL SFFGSDYVSV DSGKQENQTL RPFFDEWPKA RDSWPELADD NSLATFSATQ 360 LSISIPMATS DFSSTSSRSP NGIYSR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FJ546693 | 0.0 | FJ546693.1 Oryza sativa Indica Group cultivar IR58 growth-regulating factor 3 (GRF3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634332.1 | 0.0 | growth-regulating factor 3 isoform X1 | ||||
Refseq | XP_015634333.1 | 0.0 | growth-regulating factor 3 isoform X2 | ||||
Swissprot | Q6AWY6 | 0.0 | GRF3_ORYSJ; Growth-regulating factor 3 | ||||
TrEMBL | A0A0E0KUR1 | 0.0 | A0A0E0KUR1_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G21620.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2463 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-46 | growth-regulating factor 5 |