PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G21010.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 339aa    MW: 35771.8 Da    PI: 6.9366
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G21010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.1e-1391142155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   +  + + a+i+  A++++k+L+
  OPUNC04G21010.1  91 QRMTHIAVERNRRRQMNEYLAVLRSLMPES---YVHRGDQASIVGGAIDFVKELE 142
                      79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.55E-1889164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.29E-1589146No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1389146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.23790141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1091142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1096147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MALDALCSAG GDVLIYDTFN ASAAAAAAAG APPMSFFFGS NAGGVEGPEN TVQVAAGAVP  60
EVDQLKQAPL GRRKRRRRAR SCKSREDAES QRMTHIAVER NRRRQMNEYL AVLRSLMPES  120
YVHRGDQASI VGGAIDFVKE LEQLLQSLEA QKRTLLMQLP PPPPPQQRQK REAKCDGAAT  180
AATTSAADQE MAAATAADGP PFARFFTYPQ YVWCHHPAQD GGGGGAAENR AGVADIEVSL  240
VETHASLRVM APRRPGQLLK MVAGLQALRL TVLHLNVTAL GSLALYSISV KVEEGCGMAT  300
VDDIAAAVHH VLCIIDAEAA SQMLLAGEAA AGPLVSLAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17177RRKRRRR
27276RKRRR
37279RKRRRRAR
491102RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-171CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552351e-171CR855235.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0142I02-OSIGBa0101B20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637096.11e-158transcription factor bHLH94
SwissprotQ9C7T43e-70BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0E0KUI90.0A0A0E0KUI9_ORYPU; Uncharacterized protein
STRINGOPUNC04G21010.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]