PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G20980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 672aa MW: 75885.9 Da PI: 5.5808 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 366.7 | 3.3e-112 | 298 | 670 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 ++lL++cA+a + +d+++ ++lL+++++++s +gd+ qRla++f++AL++rla+++s++y++l++++ts + + l+a+kl++ ++P+ k+s+ OPUNC04G20980.1 298 TTLLIHCAQATAIDDHRNSNELLKQIRQRSSAYGDAGQRLAHCFANALESRLAGTGSNIYRSLAAKRTS---VYDILNAFKLYVTACPFKKISN 388 689**************************************************************9999...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 + +aIl+a +g +r+Hi+D++i++G+QWp ++q +++Rp+gpps+RiTg++ p++g ++ +e+tg+rL+++A+ ++vpfe+++ +a +++ OPUNC04G20980.1 389 FFSIEAILNASKGVTRLHIVDYGIQYGFQWPIFFQRISKRPGGPPSVRITGIDLPQPGfrPAQLIEATGRRLHDYARMFNVPFEYHA-IAAKWD 481 *********************************************************9*999*************************.7999** PP GRAS 188 dleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 ++ +++L++++ +E l+Vn+ +++ +++de v+ +s+r +vLk++++++P+++++ + +n++ F++rf eal yys+lfd+le++++r + OPUNC04G20980.1 482 TICVKDLKIDKdkDELLVVNCLFRMRNMMDEMVTDDSPRMQVLKTIRKMNPNLFIHGVVNGTYNAPFFVTRFKEALFYYSSLFDMLETTASRVD 575 *********9999********************************************************************************* PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 e+r +Er l+gre+ nvvaceg+er+er et+++W+ r +aGFk++pl+++++k+a++ ++k + + + v+e+++++++gWk+r ++++SaW OPUNC04G20980.1 576 ENRLLIERDLFGREALNVVACEGTERVERPETYKQWQVRNIRAGFKQLPLNQETVKKARYKVNKSYHRDFLVDEDNKWMLQGWKGRIIFALSAW 669 ******************************************************************999************************* PP GRAS 374 r 374 + OPUNC04G20980.1 670 E 670 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.758 | 271 | 650 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-109 | 298 | 670 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence Send to blast |
MSDLGEEPVL PWLSLCERKG TISQEVKGWI LFQDSRIMLD SGSYDDVDYG DLFSITNPPP 60 PHLLNFPLQF FSSNGFHSSA DDSHTSPAGM FGSTPSPTST TTELENSEDL SESADDAVLA 120 YINQFLLEDE EDESCPGTVT SVEDSALLAV EKPFVEILTA SQEACQENSW IDSCCDFTGN 180 GGLLDMFTTK HATCQPVPCE FERKGECTVH KGRKKPHDDC LLVEEESRRN KQLAVSEEET 240 VREMFDKVLL CNGECELRAP LPAEARNCGV YVKGSGNKRG RKKGKSGASA EDDAVDLTTL 300 LIHCAQATAI DDHRNSNELL KQIRQRSSAY GDAGQRLAHC FANALESRLA GTGSNIYRSL 360 AAKRTSVYDI LNAFKLYVTA CPFKKISNFF SIEAILNASK GVTRLHIVDY GIQYGFQWPI 420 FFQRISKRPG GPPSVRITGI DLPQPGFRPA QLIEATGRRL HDYARMFNVP FEYHAIAAKW 480 DTICVKDLKI DKDKDELLVV NCLFRMRNMM DEMVTDDSPR MQVLKTIRKM NPNLFIHGVV 540 NGTYNAPFFV TRFKEALFYY SSLFDMLETT ASRVDENRLL IERDLFGREA LNVVACEGTE 600 RVERPETYKQ WQVRNIRAGF KQLPLNQETV KKARYKVNKS YHRDFLVDED NKWMLQGWKG 660 RIIFALSAWE PN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 7e-48 | 303 | 671 | 24 | 379 | Protein SCARECROW |
5b3h_D | 7e-48 | 303 | 671 | 24 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100784 | 0.0 | AK100784.1 Oryza sativa Japonica Group cDNA clone:J023120N07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637021.1 | 0.0 | scarecrow-like protein 9 | ||||
Swissprot | Q9XE58 | 1e-164 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A0E0KUI6 | 0.0 | A0A0E0KUI6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G20980.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13841 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-155 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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