PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G20560.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 460aa    MW: 50945.7 Da    PI: 6.3257
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G20560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-1659103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++l+++a +++G   W++I +++g ++t+ q++s+ qk+
  OPUNC04G20560.1  59 REKWTEDEHKLFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 103
                      789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-1553106IPR009057Homeodomain-like
PROSITE profilePS5129420.31854108IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-956110IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-1557106IPR006447Myb domain, plants
SMARTSM007173.8E-1358106IPR001005SANT/Myb domain
PfamPF002491.9E-1459102IPR001005SANT/Myb domain
CDDcd001673.48E-1061104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MARFQETKAM NDQGPVADHV GHQNLMENLT DPLDSSGMDM MDEARIPKAR KPYTITKQRE  60
KWTEDEHKLF LEALQLHGRA WRRIQEHIGT KTAVQIRSHA QKFFSKVIKE SSGDNCNSLG  120
AAPSIQIPPP RPKRKPVHPY PRKLGSTASK NVPALKQLEK PQLQVQSLYD QDNGSPTSVL  180
TVAQIRLDTL GSDSGGSPAS TIDIEESPAP SIATAELAVE LPPTNAEEAK GNCDHEEVTC  240
DRSGAPVLRL FGKRVMVNDL HQMSMPDAGN LQTVADMEVD ASAETPTSGT GKFSSHGAAE  300
ANTWNPWLTN THQFLYYLPN GQFFSVHSAL PCFTYHNEGV TCHQLSNPQV VTSDQQHQHQ  360
TSEAVNYKCI QREGSWTESN TSSSSVPETT HNSETRESYR HGNRNEDEMV PFPDSRKCVS  420
PGSNCRRGFV PYKRCVADSE VLKSQAPQEE ADGEMTRLCL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1012090.0AK101209.1 Oryza sativa Japonica Group cDNA clone:J033031A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636284.10.0uncharacterized protein LOC4336779
TrEMBLA0A0E0KUD50.0A0A0E0KUD5_ORYPU; Uncharacterized protein
STRINGOPUNC04G20560.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.13e-35MYB_related family protein