PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G20430.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 357aa    MW: 38242.3 Da    PI: 5.2572
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G20430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.23.6e-24111186172
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                      f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk++
  OPUNC04G20430.1 111 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRFVKEK 186
                      89***************************955556888************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-33102186IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-23108186IPR015300DNA-binding pseudobarrel domain
CDDcd100176.62E-21109186No hitNo description
SMARTSM010191.3E-11111210IPR003340B3 DNA binding domain
PROSITE profilePS508639.883111217IPR003340B3 DNA binding domain
PfamPF023623.3E-21111186IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEFATTSSRF SKEEEEEEEE EGEQEMEQEQ DEEEEEAEAS PREIPFMTAA AAATASSSSP  60
TSVSPSAAAS AAASTSASGS PFRSSDCAGA SGSGGGGGGE DVEVIEKEHM FDKVVTPSDV  120
GKLNRLVIPK QHAEKYFPLD AAANEKGLLL SFEDRTGKLW RFRYSYWNSS QSYVMTKGWS  180
RFVKEKPPAP PATLYEHHRF RQGFDFRNIN PAVPARQLVF FGSPGTGIHQ HPPLPPPPPP  240
PLHITVHHPS PVVTAGLPMV LDSVPHVNNP AAAAKRVRLF GVNLDNPHPD GGQSSGHDAN  300
ALSLRMPGWQ RPAPLRSLEL PPHMPVGAAG AESPAASSPS SSSSSKREAH SSLDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-48106187384B3 domain-containing transcription factor NGA1
5os9_B8e-48106187384B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8552330.0CR855233.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0303A11-B0406H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691551.11e-142PREDICTED: B3 domain-containing protein Os04g0581400-like
SwissprotQ7F9W24e-64Y4814_ORYSJ; B3 domain-containing protein Os04g0581400
TrEMBLA0A0E0KUB90.0A0A0E0KUB9_ORYPU; Uncharacterized protein
STRINGOPUNC04G20430.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.16e-48B3 family protein
Publications ? help Back to Top
  1. Je BI, et al.
    RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice.
    Plant Cell, 2010. 22(6): p. 1777-91
    [PMID:20581303]