PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G20350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 622aa MW: 65226.8 Da PI: 7.3696 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 285.9 | 1.1e-87 | 260 | 622 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 ++lL e+A a+++g++e a + La l+ a+++gd qRl+a+++ AL+ r+ + a p e+ a ++++++sP+++++ OPUNC04G20350.1 260 RQLLSEAASAIADGHHETAATHLAALKRAANSRGDVEQRLVAMMVAALSCRIGQ------TASVPDLC----GGEQRAGSQILHDISPCFRLAL 343 689**************************************************9......22222222....4455566689************ PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakr 185 +aN aI++av ++++H +Dfd+s + Q + L++ La+R+ + +sl++T+v +p+s + +l ++g+ L+k+Ae+ g++ +f++ v+ r OPUNC04G20350.1 344 HAANVAIVDAVGDHRAIHLVDFDVSAP-QHADLIRCLAARRLPGASLKVTAVTDPTSPftqsVTATLPAVGDHLQKIAERAGIEYRFKM-VSCR 435 ************************987.99************************9988888788899*********************9.7999 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 ++e ++L ++ gEal+Vnl+++l +++desvs +++rde+L+ v+ l P+vv +veqe++ n++++ +rf++a+ +y a+++sl++++pres OPUNC04G20350.1 436 AGEIEASKLGCEAGEALVVNLAFALSHVPDESVSPANPRDEILRRVRALGPQVVALVEQELNSNTAPLTTRFTDACAHYGAILESLDVTIPRES 529 ********************************************************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 er+ E++ l+ ++ n+v egaer er+e ++kWr+r+++aGF+pv+l+ +a+q+ + v+ g+ v+ e+g l lgW++r ++++SaW OPUNC04G20350.1 530 AERARAEAA-LAGRAANAVGREGAERLERCEVFGKWRARFGMAGFRPVALGPGIADQVLARQGPVA-AGFAVKAENGVLRLGWMGRVVTVASAW 621 *********.666678*****************************************977777777.99************************* PP GRAS 374 r 374 r OPUNC04G20350.1 622 R 622 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.1 | 233 | 603 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-85 | 260 | 622 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 622 aa Download sequence Send to blast |
MEPGAPWRDP RQGYLYGVGS AVQMPMQQRS DAAAAAGGVL KRSLGDMERW QQHQQQQRQI 60 AMQQQLYLRT VRQRTAAASA AVSPLTSADI AAVLGGPPSQ PLVLSGSSMG GALGSPSSTL 120 SSLTTASRAV AMPLMQPQLQ RVPYMASSPQ VQAFGTARAL VPHPAVSDLS IFQELEKQLL 180 GDDDEVEAAM SGTGSAVTGS EWEEQLNSIT AAPSPPLTAA TTPNNNHNAV GMTRSPSNSS 240 TSTASSSASC SPPTSASTSR QLLSEAASAI ADGHHETAAT HLAALKRAAN SRGDVEQRLV 300 AMMVAALSCR IGQTASVPDL CGGEQRAGSQ ILHDISPCFR LALHAANVAI VDAVGDHRAI 360 HLVDFDVSAP QHADLIRCLA ARRLPGASLK VTAVTDPTSP FTQSVTATLP AVGDHLQKIA 420 ERAGIEYRFK MVSCRAGEIE ASKLGCEAGE ALVVNLAFAL SHVPDESVSP ANPRDEILRR 480 VRALGPQVVA LVEQELNSNT APLTTRFTDA CAHYGAILES LDVTIPRESA ERARAEAALA 540 GRAANAVGRE GAERLERCEV FGKWRARFGM AGFRPVALGP GIADQVLARQ GPVAAGFAVK 600 AENGVLRLGW MGRVVTVASA WR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-34 | 278 | 622 | 22 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100294 | 0.0 | AK100294.1 Oryza sativa Japonica Group cDNA clone:J023075P18, full insert sequence. | |||
GenBank | AL606688 | 0.0 | AL606688.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637100.1 | 0.0 | scarecrow-like protein 8 | ||||
TrEMBL | A0A0E0KUA9 | 0.0 | A0A0E0KUA9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G20350.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4188 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 5e-87 | SCARECROW-like 8 |