PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G19950.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 194aa    MW: 20206.3 Da    PI: 8.9628
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G19950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-171765255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+G+r  +++g+Wv+eIr+p++   ++r++lg+f tae+Aa a++ a+++l+g
  OPUNC04G19950.1 17 FYRGIR--SRSGKWVSEIREPRK---TRRIWLGTFPTAEMAAVAYDVAALALRG 65
                     69***6..678*********843...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.77E-191774IPR016177DNA-binding domain
SMARTSM003805.0E-301779IPR001471AP2/ERF domain
PROSITE profilePS5103220.9161773IPR001471AP2/ERF domain
PfamPF008471.9E-91865IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-281874IPR001471AP2/ERF domain
CDDcd000189.52E-281875No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSDHGPPSPR SSGKHPFYRG IRSRSGKWVS EIREPRKTRR IWLGTFPTAE MAAVAYDVAA  60
LALRGPDAAL NFPDLASSRT ALPASSSADD IRAAAAAAAA SLQHDRLPGR AGGGIAPAAS  120
GSAHQQRGGS SSSGGGAGSH QYFLDEEALF ETPQFLRNMA AGMMMSPPRL SPGSSDDSPD  180
PSEAGGSLWS YRDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-141178168ATERF1
3gcc_A3e-141178168ATERF1
5wx9_A1e-1314731172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-158CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880363.11e-100ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ901e-46ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0E0KU541e-133A0A0E0KU54_ORYPU; Uncharacterized protein
STRINGOPUNC04G19950.11e-134(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-23ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]