PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G19830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 641aa    MW: 69086.9 Da    PI: 7.0407
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G19830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox71.31.1e-22110165156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe++F+++++p++++r+eL+k+lgL+ rqVk+WFqNrR+++k
  OPUNC04G19830.1 110 KKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMK 165
                      688999***********************************************998 PP

2START102.95.6e-3325838486206
                      CTTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
            START  86 ssggalqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                       +g+ l+l v elq+lsplvp R++ f+R+++ql +g+w++vdvS d+    +      s   + +++lpSg+++++++ng  k twveh++++
  OPUNC04G19830.1 258 VPGSSLELAVGELQVLSPLVPiREVKFLRFSKQLAEGVWAVVDVSADELMRDQGitsasSTANMNCRRLPSGCVLQDSPNGFVKATWVEHTEYD 351
                      57899*****************************************9987666666454555689***************************** PP

                      SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                      ++++h l+r+l++sgla ga +w atlqrqce+
  OPUNC04G19830.1 352 EASVHPLYRPLLRSGLALGAGRWIATLQRQCEC 384
                      *******************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-2495167IPR009057Homeodomain-like
SuperFamilySSF466899.19E-2298165IPR009057Homeodomain-like
PROSITE profilePS5007118.155107167IPR001356Homeobox domain
SMARTSM003893.2E-20108171IPR001356Homeobox domain
CDDcd000866.82E-21109165No hitNo description
PfamPF000465.6E-20110165IPR001356Homeobox domain
PRINTSPR000315.6E-5138147IPR000047Helix-turn-helix motif
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
PRINTSPR000315.6E-5147163IPR000047Helix-turn-helix motif
SMARTSM002344.6E-7161384IPR002913START domain
PfamPF018521.8E-27258384IPR002913START domain
SuperFamilySSF559611.19E-12270385No hitNo description
PROSITE profilePS5084824.285272387IPR002913START domain
SuperFamilySSF559611.45E-17404607No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MSFGDHFGDG VVAAGMQFPY SGAGPGVFTS SPALSLALAD AVAGRDGGGG KMVTVVHGGG  60
GGRAKARDAS EVENEVSRSG SDHLDVVSRG GAGGDDDDED AEHGNPCKRK KRYHRHTPQQ  120
IQELEAMFKE CPHPDEKQRA ELSKRLGLEP RQVKFWFQNR RTQMKMQLER HENALLKQEN  180
DKLRSENLSV REAMRNPVCG GCGGPAMLGE VSLEEHHLRV ENARLKDELS RVCALAAKFL  240
GKSVSLMAPP QMHQPHPVPG SSLELAVGEL QVLSPLVPIR EVKFLRFSKQ LAEGVWAVVD  300
VSADELMRDQ GITSASSTAN MNCRRLPSGC VLQDSPNGFV KATWVEHTEY DEASVHPLYR  360
PLLRSGLALG AGRWIATLQR QCECLATLMS SIALPEHNSS AIHPEGKRSM LKLARRMMEN  420
FCAGVSTSST REWSKLDGLT GNIGEDVHVM ARKSVDEPGM PPGVVLSAAT SVWMPVMPER  480
LFNFLRNKGL RAEWDILSNG GPMQEVTSIA KGQQNGNTVC LLKASPTNDN QNNMLILQET  540
CADASGSMVV YAPVDIPAMH LVMSGGDSSC VALLPSGFAI LPAGPSIGAD HKMGGSLLTV  600
AFQILVNSQP SAKLTVESVE TVSNLISCTI KKIKTALHCN V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119140.0AK111914.1 Oryza sativa Japonica Group cDNA clone:J033128F17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637147.10.0homeobox-leucine zipper protein ROC4
SwissprotQ7Y0V90.0ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBLA0A0E0KU370.0A0A0E0KU37_ORYPU; Uncharacterized protein
STRINGOPUNC04G19830.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.11e-157homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wei J, et al.
    GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7.
    Plant Sci., 2016. 252: p. 133-143
    [PMID:27717449]
  3. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]