PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G19830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 641aa MW: 69086.9 Da PI: 7.0407 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 71.3 | 1.1e-22 | 110 | 165 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r+eL+k+lgL+ rqVk+WFqNrR+++k OPUNC04G19830.1 110 KKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMK 165 688999***********************************************998 PP | |||||||
2 | START | 102.9 | 5.6e-33 | 258 | 384 | 86 | 206 |
CTTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 86 ssggalqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksnghskvtwvehvdlk 173 +g+ l+l v elq+lsplvp R++ f+R+++ql +g+w++vdvS d+ + s + +++lpSg+++++++ng k twveh++++ OPUNC04G19830.1 258 VPGSSLELAVGELQVLSPLVPiREVKFLRFSKQLAEGVWAVVDVSADELMRDQGitsasSTANMNCRRLPSGCVLQDSPNGFVKATWVEHTEYD 351 57899*****************************************9987666666454555689***************************** PP SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 174 grlphwllrslvksglaegaktwvatlqrqcek 206 ++++h l+r+l++sgla ga +w atlqrqce+ OPUNC04G19830.1 352 EASVHPLYRPLLRSGLALGAGRWIATLQRQCEC 384 *******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 95 | 167 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.19E-22 | 98 | 165 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.155 | 107 | 167 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-20 | 108 | 171 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.82E-21 | 109 | 165 | No hit | No description |
Pfam | PF00046 | 5.6E-20 | 110 | 165 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 5.6E-5 | 138 | 147 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 142 | 165 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.6E-5 | 147 | 163 | IPR000047 | Helix-turn-helix motif |
SMART | SM00234 | 4.6E-7 | 161 | 384 | IPR002913 | START domain |
Pfam | PF01852 | 1.8E-27 | 258 | 384 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.19E-12 | 270 | 385 | No hit | No description |
PROSITE profile | PS50848 | 24.285 | 272 | 387 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.45E-17 | 404 | 607 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 641 aa Download sequence Send to blast |
MSFGDHFGDG VVAAGMQFPY SGAGPGVFTS SPALSLALAD AVAGRDGGGG KMVTVVHGGG 60 GGRAKARDAS EVENEVSRSG SDHLDVVSRG GAGGDDDDED AEHGNPCKRK KRYHRHTPQQ 120 IQELEAMFKE CPHPDEKQRA ELSKRLGLEP RQVKFWFQNR RTQMKMQLER HENALLKQEN 180 DKLRSENLSV REAMRNPVCG GCGGPAMLGE VSLEEHHLRV ENARLKDELS RVCALAAKFL 240 GKSVSLMAPP QMHQPHPVPG SSLELAVGEL QVLSPLVPIR EVKFLRFSKQ LAEGVWAVVD 300 VSADELMRDQ GITSASSTAN MNCRRLPSGC VLQDSPNGFV KATWVEHTEY DEASVHPLYR 360 PLLRSGLALG AGRWIATLQR QCECLATLMS SIALPEHNSS AIHPEGKRSM LKLARRMMEN 420 FCAGVSTSST REWSKLDGLT GNIGEDVHVM ARKSVDEPGM PPGVVLSAAT SVWMPVMPER 480 LFNFLRNKGL RAEWDILSNG GPMQEVTSIA KGQQNGNTVC LLKASPTNDN QNNMLILQET 540 CADASGSMVV YAPVDIPAMH LVMSGGDSSC VALLPSGFAI LPAGPSIGAD HKMGGSLLTV 600 AFQILVNSQP SAKLTVESVE TVSNLISCTI KKIKTALHCN V |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111914 | 0.0 | AK111914.1 Oryza sativa Japonica Group cDNA clone:J033128F17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637147.1 | 0.0 | homeobox-leucine zipper protein ROC4 | ||||
Swissprot | Q7Y0V9 | 0.0 | ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4 | ||||
TrEMBL | A0A0E0KU37 | 0.0 | A0A0E0KU37_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G19830.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1203 | 37 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 1e-157 | homeodomain GLABROUS 1 |
Publications ? help Back to Top | |||
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