PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC04G19770.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 380aa MW: 37925.1 Da PI: 8.7325

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G19770.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	81	142	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss OPUNC04G19770.2 81 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 142 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	77	130	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-33	83	139	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	85	139	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	87	123	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MQPTGTSAAP CVYQQGLGLV KPMEEMLMAA NAAAGAGTNP NQPATVPSSV TGGALRGGGG 60 APAVAGGAGA GSTERRARPQ KEKALNCPRC NSTNTKFCYY NNYSLQQPRY FCKTCRRYWT 120 EGGSLRNVPV GGGSRKNKRS SSSASSASAS TANSVVTSTS MSMASTAGGA SKNPKLVHEG 180 AHDLNLAFPH HGGLQAPAEF PAFPSLESSS VCNPGGAMGT NGRAGGAVGA LSAMELLRST 240 GCYMPLQVPM QMPADYATPG FALGEFRAPP PPPPQSSQSL LGFSLDAHGS VGGPSAAGFG 300 SSAGLQGVPE STGRLLFPFE DLKPAVSSGT GGGGASGGGV DGGHQFDHGK EQQAGGGGPG 360 GHDTPGFWNG MIGGGSGTSW

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MQPTGTSAAP CVYQQGLGLV KPMEEMLMAA NAAAGAGTNP NQPATVPSSV TGGALRGGGG  60
APAVAGGAGA GSTERRARPQ KEKALNCPRC NSTNTKFCYY NNYSLQQPRY FCKTCRRYWT  120
EGGSLRNVPV GGGSRKNKRS SSSASSASAS TANSVVTSTS MSMASTAGGA SKNPKLVHEG  180
AHDLNLAFPH HGGLQAPAEF PAFPSLESSS VCNPGGAMGT NGRAGGAVGA LSAMELLRST  240
GCYMPLQVPM QMPADYATPG FALGEFRAPP PPPPQSSQSL LGFSLDAHGS VGGPSAAGFG  300
SSAGLQGVPE STGRLLFPFE DLKPAVSSGT GGGGASGGGV DGGHQFDHGK EQQAGGGGPG  360
GHDTPGFWNG MIGGGSGTSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL662954	0.0	AL662954.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637008.1	1e-159	dof zinc finger protein 1 isoform X1
Swissprot	Q9SXG8	1e-160	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A0E0KU29	0.0	A0A0E0KU29_ORYPU; Uncharacterized protein
STRING	OPUNC04G19770.2	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	6e-37	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]