PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G19770.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 373aa    MW: 37338.4 Da    PI: 8.6731
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G19770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1252.3e-3974135263
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                      kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  OPUNC04G19770.1  74 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 135
                      7899******************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2768123IPR003851Zinc finger, Dof-type
PfamPF027012.5E-3376132IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.05978132IPR003851Zinc finger, Dof-type
PROSITE patternPS01361080116IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDAAHWHQGL GLVKPMEEML MAANAAAGAG TNPNQPATVP SSVTGGALRG GGGAPAVAGG  60
AGAGSTERRA RPQKEKALNC PRCNSTNTKF CYYNNYSLQQ PRYFCKTCRR YWTEGGSLRN  120
VPVGGGSRKN KRSSSSASSA SASTANSVVT STSMSMASTA GGASKNPKLV HEGAHDLNLA  180
FPHHGGLQAP AEFPAFPSLE SSSVCNPGGA MGTNGRAGGA VGALSAMELL RSTGCYMPLQ  240
VPMQMPADYA TPGFALGEFR APPPPPPQSS QSLLGFSLDA HGSVGGPSAA GFGSSAGLQG  300
VPESTGRLLF PFEDLKPAVS SGTGGGGASG GGVDGGHQFD HGKEQQAGGG GPGGHDTPGF  360
WNGMIGGGSG TSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281290.0AB028129.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637008.11e-165dof zinc finger protein 1 isoform X1
SwissprotQ9SXG81e-167DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBLA0A0E0KU280.0A0A0E0KU28_ORYPU; Uncharacterized protein
STRINGOPUNC04G19770.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.17e-37Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]