PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G19640.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 599aa    MW: 61668.6 Da    PI: 8.807
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G19640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0598120123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F r  nL+ H r H
  OPUNC04G19640.1  98 FVCEVCNKGFQREQNLQLHRRGH 120
                      89*******************88 PP
2zf-C2H211.60.00088175197123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H + +
  OPUNC04G19640.1 175 WKCDKCSKRYAVQSDWKAHSKIC 197
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.0E-797120No hitNo description
Gene3DG3DSA:3.30.160.608.3E-697120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.09498120IPR007087Zinc finger, C2H2
SMARTSM003550.004198120IPR015880Zinc finger, C2H2-like
PfamPF121713.9E-598120IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-4163196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.0E-7170195No hitNo description
SMARTSM00355140175195IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MASNSSAAAA AAFFGISRDG DQHDQIKPLI SHQQQQLAAS LTGVATAAPT AASSQGAPPA  60
APPAKKKRNL PGNPSNQPNP DAEVIALSPK TLLATNRFVC EVCNKGFQRE QNLQLHRRGH  120
NLPWKLKQKN PLQAQRRRVY LCPEPTCVHH DPARALGDLT GIKKHFCRKH GEKKWKCDKC  180
SKRYAVQSDW KAHSKICGTR EYRCDCGTLF SRRDSFITHR AFCDALAQES SRLPPTSLSS  240
LTSHLYGASN AGNMALSLSQ VGSHLTTSLQ DGGGHHHPSP ELLRLGGAGG GGGGSSIAAR  300
LDHLLSPSGA SAFRPPQPAF FLNAAAAAAA TGQDFGDDAG NGQHSSFLQA KPFHGLMQLP  360
DLQGNGAGGP GAPGPNLFNL GFFASNGNSS GSSHEHASQG LMSNDQFSGG AGGGGGSDAS  420
AAGIFGGLYN DQAAMLPQMS ATALLQKAAQ MGATSSANGA GSMFRGFVGS SPHMRPAAQH  480
MDQSDAHLND LMNSLAGGGV NAAAMFGGTN GGGVPGAGMF DPRLCDIEHE VKFSQGGGGG  540
GGAGAGTGDG TRDFLGVGGG GIVHGMSTPR GDHHQSSSDM SSLEAEMKSA SSFNGRRMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-34171237369Zinc finger protein JACKDAW
5b3h_F8e-34171237369Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1207230.0AK120723.1 Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001338648.10.0uncharacterized protein LOC542199
RefseqXP_008668634.10.0uncharacterized protein LOC542199 isoform X1
RefseqXP_008668635.10.0uncharacterized protein LOC542199 isoform X1
TrEMBLA0A0E0KU120.0A0A0E0KU12_ORYPU; Uncharacterized protein
STRINGOPUNC04G19640.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-102indeterminate(ID)-domain 2