PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC04G19530.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 344aa MW: 39295.8 Da PI: 9.1185

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G19530.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82	6e-26	205	254	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d+++yF+lpi++A+++L++++++LKr+CRqy+I+RWPhRkiksl OPUNC04G19530.1 205 ASITLVDIAQYFHLPIREASRTLKIGVSILKRKCRQYNIPRWPHRKIKSL 254 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.338	190	274	IPR003035	RWP-RK domain
Pfam	PF02042	4.4E-21	206	254	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MDAAAAAVST LSALAVFAST LDHDAGAVRS VHGYKVYGRG GRRRWERWVE REFVLTPASC 60 REVQAPVAPP RILPAEWRGR PAYREGQVVA EGSWRCILAF DSAAAAVAPP HTPPPVLCPF 120 LNPRLMCVPS LYNDLEKVFR FQNVEKIPKL MQCDSKEKLS RWDARDKNSD EVLASGSDSD 180 YDLQSGAELK PTVQKQRRAN KKHIASITLV DIAQYFHLPI REASRTLKIG VSILKRKCRQ 240 YNIPRWPHRK IKSLDSLIQD LEYVIDDGDD DDDTGDDVQQ EKHKQTEEEK QKAIMALTRR 300 KQMLETEKET IQQIPAMDLK VETKQFREDV FKRRYRAKKD LAND

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MDAAAAAVST LSALAVFAST LDHDAGAVRS VHGYKVYGRG GRRRWERWVE REFVLTPASC  60
REVQAPVAPP RILPAEWRGR PAYREGQVVA EGSWRCILAF DSAAAAVAPP HTPPPVLCPF  120
LNPRLMCVPS LYNDLEKVFR FQNVEKIPKL MQCDSKEKLS RWDARDKNSD EVLASGSDSD  180
YDLQSGAELK PTVQKQRRAN KKHIASITLV DIAQYFHLPI REASRTLKIG VSILKRKCRQ  240
YNIPRWPHRK IKSLDSLIQD LEYVIDDGDD DDDTGDDVQQ EKHKQTEEEK QKAIMALTRR  300
KQMLETEKET IQQIPAMDLK VETKQFREDV FKRRYRAKKD LAND

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	332	339	RRYRAKKD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606628	1e-121	AL606628.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10, complete sequence.
GenBank	AP014960	1e-121	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	1e-121	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634161.1	0.0	protein RKD5 isoform X1
TrEMBL	A0A0E0KTZ6	0.0	A0A0E0KTZ6_ORYPU; Uncharacterized protein
STRING	OPUNC04G19530.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-40	RWP-RK domain-containing protein