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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC04G18160.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
GATA |
Protein Properties |
Length: 450aa MW: 49265 Da PI: 7.3004 |
Description |
GATA family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC04G18160.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GATA | 51.2 | 1.7e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C++Cg+t+TplWR+gp ++ LCnaCG ++r kg+
OPUNC04G18160.1 7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41
****************55555***********997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0008270 | Molecular Function | zinc ion binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 450 aa
Download sequence Send
to blast |
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLTNYTPMHA RDDIDAEEPR 60 ASKLKPPTLK LKEQKQPKKN PIHITMENGP FSDQNFRKMG DPDLSNRSGS GSALSYSESC 120 APYGTADASE MTASAQSHAW ESLVPSKRRS CVTRPKPSPV EKLAKDLNSI MHEEQLLYLS 180 GSSEEDLIYR SETPVDSFEM GYGSMLLRPN SKSPEEESEA SSIPADNKSY ITSESYSGSV 240 SFVYSESKAT SNQNVITEQP KKFLVQTSDS ARRANFHTEN QDTLENANSP LVSLHMEGKD 300 SEETRVKTCA SNRLTKSTVN PLKRPHGTHF QSSIELRGTM RSPKRVSKYG DVMGLNCQAS 360 FVPKPGNAKD LASSDRALNL FMLPPDKLSM LVPPHYSNND SDQDLLLDVP LNARHPEAEL 420 LCQPSQLSSV AHSSTSEGGS AGGEGCLKQP
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK070729 | 0.0 | AK070729.1 Oryza sativa Japonica Group cDNA clone:J023063M07, full insert sequence. |