PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G17950.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 269aa    MW: 29994.5 Da    PI: 4.9098
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G17950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1968121456
                      -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ft+eq++ Le++F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  OPUNC04G17950.1  68 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 121
                      458**************9899********************************9 PP
2HD-ZIP_I/II125.23e-4066159193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ e+L++e+ +L+ +l+e
  OPUNC04G17950.1  66 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLHE 159
                      69******************999******************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-1856125IPR009057Homeodomain-like
PROSITE profilePS5007117.50862123IPR001356Homeobox domain
SMARTSM003898.6E-2065127IPR001356Homeobox domain
CDDcd000861.45E-1767124No hitNo description
PfamPF000464.1E-1768121IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.8E-2068130IPR009057Homeodomain-like
PRINTSPR000316.8E-794103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000316.8E-7103119IPR000047Helix-turn-helix motif
PfamPF021838.3E-14123164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVEQLASWAR IAMDRCDHHL QQQHQFLMPP PTAVVPQQLC MPMMADEQYV VGGGGAAAAG  60
RGAAGERKRR FTEEQIRSLE SMFHAHHAKL EPREKAELAR ELGLQPRQVA IWFQNKRARW  120
RSKQLEHDYA ALRSKYDALH SRVESLKQEK LALTVQLHEL RERLREREER SGNGGAATTA  180
ASSSSCNGSG SEEVDDDDKR NVAAGCLDLE PPESCVLGGA TCATPADVSV ESDQCDDQLD  240
YDEGLFPESF CATPELWEPW PLVEWNAVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2244400.0AY224440.1 Oryza sativa (japonica cultivar-group) isolate 22834 homeodomain leucine zipper protein-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652595.11e-134PREDICTED: homeobox-leucine zipper protein HOX22-like
SwissprotQ01IK01e-134HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ51e-134HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A0E0KTD10.0A0A0E0KTD1_ORYPU; Uncharacterized protein
STRINGOPUNC04G17950.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-34homeobox 7