PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G17930.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 737aa    MW: 79498.3 Da    PI: 6.3282
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G17930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.31.6e-3196180187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+++e+laLi++r+em+ ++r++ lk+plWeevs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f++lea
  OPUNC04G17930.1  96 RWPREETLALIRIRSEMDATFRDATLKGPLWEEVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFTELEA 180
                      8*********************************************************************866665..******985 PP
2trihelix107.31e-33483568187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev+aLi++r e++ r++++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  OPUNC04G17930.1 483 RWPKTEVQALIQLRMELDMRYQETGPKGPLWEEISSGMQRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 568
                      8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.1E-493155IPR001005SANT/Myb domain
CDDcd122034.94E-3095160No hitNo description
PfamPF138374.3E-2295181No hitNo description
PROSITE profilePS500907.15595153IPR017877Myb-like domain
PROSITE profilePS500907.805476540IPR017877Myb-like domain
SMARTSM007176.8E-6480542IPR001005SANT/Myb domain
PfamPF138372.4E-23482569No hitNo description
Gene3DG3DSA:1.10.10.602.3E-4482539IPR009057Homeodomain-like
CDDcd122034.87E-29483547No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MQQQQGGGSQ YGAVPPDMGL FSPTHHASAA PLPLSSRPPP AALSQPPPPQ QQPHRTSYDE  60
LAAATSAGAG GFPDDDMLGD AGGSGGGGGS GAAVNRWPRE ETLALIRIRS EMDATFRDAT  120
LKGPLWEEVS RKLAELGYKR SAKKCKEKFE NVHKYYKRTK EGRAGRQDGK SYRFFTELEA  180
LHAAAPQTPQ PQQQQLPPVT SSAPAMHAFA APPVSAPPPM SAMPPPPPGP IQPAPISSAA  240
PAVPLELPPQ PPINLQGLSF SSMSGSESDD ESEDDEMTAE TGGSQDRLGK RKRGAGGKKL  300
ATFFEGLIKQ VVDMQEEMQR RFLETMEKRE AERTAREEAW RRQEVARLNR EQEQLAQERA  360
AAASRDAAII SFLQRIGGQS VQVPPVATVI QMPTPVQLQT PPPVKQPARQ HQPHPTPPAP  420
IPASPLQQQP PQPQHKETSH HEAVTPRSAP PTSGSSLEMV PAAEQHVESG LGGGEGGSAS  480
SSRWPKTEVQ ALIQLRMELD MRYQETGPKG PLWEEISSGM QRLGYNRSSK RCKEKWENIN  540
KYFKKVKESN KKRPEDSKTC PYFHQLDAIY RRKHLTGGGG GGGGASAANV ASTVAATTIE  600
HQNSNRHEIE GKNINDNDKR NNGGGGGAQV PTSNGDTAPT TATFDVDSGM KKPEDIVREL  660
SEQLPREFTT DETDSDDMGD DYTDDGEEGE DDGKMQYRIQ FQRPNPGGAN TAPPPATTPA  720
SAVPTSTPTS TFLAMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138146KRSAKKCKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX682610.0X68261.1 O.sativa gt-2 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637050.10.0trihelix transcription factor GTL1 isoform X2
TrEMBLA0A0E0KTC80.0A0A0E0KTC8_ORYPU; Uncharacterized protein
STRINGOPUNC04G17930.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-48Trihelix family protein