PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G17450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 272aa MW: 29356.8 Da PI: 6.5012 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.2 | 5e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d + ++G g+W++++ + g+ R +k+c++rw +yl OPUNC04G17450.1 15 KGLWSPEEDQKLRDFILRYGHGCWSAVPVKAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.5e-16 | 69 | 113 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g ++ eE+e ++++ +G++ W+ Iar+++ gRt++++k++w++yl OPUNC04G17450.1 69 GMFSREEEETVMNLHATMGNK-WSQIARHLP-GRTDNEVKNYWNSYL 113 56999****************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.144 | 10 | 62 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-21 | 10 | 65 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.49E-28 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-11 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-13 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.01E-10 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 24.273 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 66 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.1E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 69 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.39E-12 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MGCKACQKPK LHYRKGLWSP EEDQKLRDFI LRYGHGCWSA VPVKAGLQRN GKSCRLRWIN 60 YLRPGLKHGM FSREEEETVM NLHATMGNKW SQIARHLPGR TDNEVKNYWN SYLKKRVEGA 120 QAAARKSAEP ADVTGSPACS EAGQERAATD RPASSESSGP VESSSADDSS CLTEPAAALA 180 AVRPHAPVIP KVMFADWFDM DYGTNLAGTA PGLSYQGSSS AQVDGPCGAA VDSLHGLSDG 240 GFCWDFDDAA DHMQGGGGLC DLLSMSEFLG IN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-26 | 15 | 118 | 7 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107135 | 0.0 | AK107135.1 Oryza sativa Japonica Group cDNA clone:002-124-C09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636234.1 | 0.0 | transcription factor LAF1 | ||||
Swissprot | Q9M0K4 | 3e-61 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A0E0KT69 | 0.0 | A0A0E0KT69_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G17450.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 4e-60 | myb domain protein 19 |
Publications ? help Back to Top | |||
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