PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G16630.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 694aa    MW: 75117.4 Da    PI: 6.3714
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G16630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.81e-23123224199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++        +++ +   +  +d +g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF+  ++
  OPUNC04G16630.1 123 FAKTLTQSDANNGGGFSVPRFCAETIfpeldysTEPPVQ--SVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFM--RD 212
                      89*********************999****986555556..5************************************************..56 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++++ +v+++r+
  OPUNC04G16630.1 213 EGGNIHVGLRRA 224
                      99*******996 PP
2Auxin_resp116.81.8e-38276359183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa++a+++++Fev+Y+Prast+eF+v++  v++a++v++++GmRfkmafetedss++++ +Gtv+gv+++dpvrWp+S+Wr+L+
  OPUNC04G16630.1 276 AATRATSGQPFEVLYYPRASTPEFCVRAGAVRTAMTVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQAADPVRWPQSPWRLLQ 359
                      68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-36112226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-28119224IPR015300DNA-binding pseudobarrel domain
CDDcd100172.90E-19122223No hitNo description
PfamPF023627.6E-22123224IPR003340B3 DNA binding domain
PROSITE profilePS5086312.379123225IPR003340B3 DNA binding domain
SMARTSM010194.6E-21123225IPR003340B3 DNA binding domain
PfamPF065076.2E-33276359IPR010525Auxin response factor
PROSITE profilePS5174519.353608688IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MELAGPTEGD GGGSVDSQLW AACAGSMSSV PPVGAAVYYF PQGHAEQASA AVDLSSARVP  60
PLVPCRVVAV RFMADAESDE VFAKIRLVPL RPGDAVVDVG EAAAAEAQRE EENNNNRPRP  120
TSFAKTLTQS DANNGGGFSV PRFCAETIFP ELDYSTEPPV QSVCAKDVHG VEWTFRHIYR  180
GTPRRHLLTT GWSPFVNKKQ LTAGDSIVFM RDEGGNIHVG LRRAKRGFCG IGGDDEGLSS  240
MPGWDQYRGL MRGNATATGG RTPPKGKVPP ENVLTAATRA TSGQPFEVLY YPRASTPEFC  300
VRAGAVRTAM TVQWCPGMRF KMAFETEDSS RISWFMGTVA GVQAADPVRW PQSPWRLLQV  360
TWDEPELLQN VKRVCPWLVE LVSSMPNLHL PSFSPPRKKP RIPPYAEFPH EGQNFTRPAF  420
PPNPMAHDHH HHGFPFLPFP DSSAQPAGIQ GARHAQFASP FPELHIGNLQ PNLMLYAGIR  480
LPPADRAAPA PRQPRIIIST DLTIGSPLGP DDAACSPSSG GKKIDDAKPR GFLLFGQAIL  540
TEEQIKNGNS GGRPASPNWD AEKAPNASEG SDSGVTQGSP TKNTTPSWSL PYFGDNNISH  600
ASEYELEPGQ CKVFVESEAV GRSLDLSALS SFEELYARLS DMFSIGSDEL RSHLVYRSPA  660
GEVKHPGDEP FCAFVKSARK LRILTDAGSD NLGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-81138037388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629580.0AL662958.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence.
GenBankAL7316290.0AL731629.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633845.10.0auxin response factor 10
SwissprotQ01I350.0ARFJ_ORYSI; Auxin response factor 10
SwissprotQ7XKK60.0ARFJ_ORYSJ; Auxin response factor 10
TrEMBLA0A0E0KSW30.0A0A0E0KSW3_ORYPU; Auxin response factor
STRINGOPUNC04G16630.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16