PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G15950.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 380aa    MW: 42985.4 Da    PI: 8.9775
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G15950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.31.2e-09581697126
              NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                      F+Pt e++v++yL  + + +   l + ++++d+y ++P  L     +a+e+ ew+fF++r++    g  ++ra   g  + + + k   +   +
  OPUNC04G15950.1  58 FDPTAEDIVNRYLPLRRALRCDALPRQVHDADVYGAHPALLAsVYPAANERfEWFFFVCRRRCP-GG--RRRA-GPGDYRLSQEAK---H---R 141
                      9***********977766666556567**************83333344457*******98854.33..3343.456555444433...2...2 PP

              NAM  99 lvglkktLvfykgrapkgektdWvmhey 126
                           +++ +y+      ++t+W m ey
  OPUNC04G15950.1 142 GNAYCHSFRYYEDAGGGFKETEWRMVEY 169
                      34567899999888888899*****999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.58352195IPR003441NAC domain
SuperFamilySSF1019411.22E-2057193IPR003441NAC domain
PfamPF023653.1E-758169IPR003441NAC domain
PROSITE profilePS5100512.233213374IPR003441NAC domain
SuperFamilySSF1019412.75E-19224373IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MRPRKSQAAP EPAAASLREE ETEDGWVFLA GRSRATRPPP PSPMARAVAS GGGGDQPFDP  60
TAEDIVNRYL PLRRALRCDA LPRQVHDADV YGAHPALLAS VYPAANERFE WFFFVCRRRC  120
PGGRRRAGPG DYRLSQEAKH RGNAYCHSFR YYEDAGGGFK ETEWRMVEYG DRGARDADVG  180
GSEGFDLVVC KVYPARGGAL HERLGADRAV LASRHRADED AKPQVLVQLY LASLRLGNPL  240
ACRVHRADNV FDEHPAVITA VLPAANDRCE WLFAAVRRRG EHRDGASPRP RKAGPGAYVP  300
VRECRVVDGR RRDIGHRLVF WYREDDDEAR RVSRRTEWWL EEYRFGPDFP YGELPAPMAR  360
GEYEELVVYK VYPKLVGNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629690.0AL662969.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCR8552130.0CR855213.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0101P20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634867.10.0uncharacterized protein LOC9267434
TrEMBLA0A0E0KSM40.0A0A0E0KSM4_ORYPU; Uncharacterized protein
STRINGOPUNC04G15950.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147671819