PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G15260.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 336aa    MW: 34882.7 Da    PI: 5.0162
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G15260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box248.2e-082258437
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                     r C+ ++ + ++lfC+ +  +lC+ C    H g    H
  OPUNC04G15260.1 22 RACDACGGEAARLFCRADAAFLCAGCDARAH-GpgsrH 58
                     68*************************9999.545556 PP
2zf-B_box22.91.8e-0761105341
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                       + C+ +e+ ++   C+ +   lC+ C   +H+       H++ p
  OPUNC04G15260.1  61 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 105
                      679*****************************6688888898877 PP
3CCT66.95.5e-23246289144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+llRY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  OPUNC04G15260.1 246 REARLLRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 289
                      9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.4241963IPR000315B-box-type zinc finger
SMARTSM003362.5E-91963IPR000315B-box-type zinc finger
PfamPF006434.8E-62259IPR000315B-box-type zinc finger
CDDcd000211.30E-92263No hitNo description
PROSITE profilePS5011910.42459106IPR000315B-box-type zinc finger
PfamPF006438.1E-661106IPR000315B-box-type zinc finger
SMARTSM003364.6E-964106IPR000315B-box-type zinc finger
PfamPF062032.2E-17246288IPR010402CCT domain
PROSITE profilePS5101716.767246288IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAMEGDDKSA VVGGAYWGLA ARACDACGGE AARLFCRADA AFLCAGCDAR AHGPGSRHAR  60
VWLCEVCEHA PAAVTCRADA AALCAACDAD IHSANPLARR HERLPVAPFF GALADAPKPF  120
ASSGPPGAGA NGEAAADDDG SNDAEAASWL LPEPDHGQKD GAVGATDVFY GADSDPYLDL  180
DFARSMDDIK AIGVQNGPPE LDITGGKLFY SDHSMNHSVS SSEAAVVPDA AAGGAPMPVV  240
SKGREREARL LRYREKRKSR RFEKTIRYAS RKAYAETRPR IKGRFAKRTK GGAGADADAD  300
GEDEEMYSSA AAAVAALMAP GGSDADYGVD GVVPTF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1210240.0AK121024.1 Oryza sativa Japonica Group cDNA clone:J023049O11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633841.11e-176zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A0E0KSC50.0A0A0E0KSC5_ORYPU; Uncharacterized protein
STRINGOPUNC04G15260.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.24e-27CONSTANS-like 3