PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G15130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 903aa    MW: 98035.8 Da    PI: 5.7355
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G15130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.21e-255415821152
           RWP-RK  11 skyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++
  OPUNC04G15130.1 541 EQYFSGSLKDAAKSLGVCPTTLKRICRQHGISRWPSRKINKV 582
                      79**************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.516517602IPR003035RWP-RK domain
PfamPF020422.5E-24541582IPR003035RWP-RK domain
SuperFamilySSF542771.15E-24792885No hitNo description
Gene3DG3DSA:3.10.20.2405.7E-23798880No hitNo description
PROSITE profilePS5174525.647801883IPR000270PB1 domain
SMARTSM006662.7E-21801883IPR000270PB1 domain
PfamPF005642.7E-17802882IPR000270PB1 domain
CDDcd064077.28E-30802882No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MDMPTPSNRA GCNGNTSGTM GPSDVPYGTA AMNFDCYSEI CSPSVADQLF SLLNDPAAHR  60
MFAMWSSTGS SPRAAGTSED VPLDAYPGLG EAVEEPSQMM SVNPTEAEKT DKSSGELGSD  120
DGAHQGSSMV PRSVAGNSLA DRMLMALSLF RESLGGGALA QVWMPIEQEG HVVLSTCEQP  180
FLLDQVLAGY REVSRHFVFS AKEEPGLQPG LPGRVFISGV PEWTSSVLYY NRPEYLRMEH  240
ALHHEIRGSL AMPIYDPSKD SCCAVLELVT RKVKPDFSAE MDSAVNLKAT KGSSNQKFFS  300
ENQQFAFTEI LDVLRAICHA HMLPLALTWV PTSNGIDGGY VVGRDGASYS QSEKTILRIH  360
ESACYVNDAK MQGFLEACAR RHLEKGQGIA GRALKSNLPF FSPDIKEYSI EDYPLAHHAR  420
KFSLHAAVAI RLRSTYTGND DYILEFFLPI NCKGSGEQQM LLNNLSSTMQ RICKSLRTVY  480
EAEVDKVNAG TAAVFRKNNE SCLPTGNTES SSHGDQSITG VSFEDASLDN KPGVMEPELA  540
EQYFSGSLKD AAKSLGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLKKIQ TVINSVHGVD  600
RSLQYDPATG SLVPVVSLPE KLVFPPCDGL PTPPVGKTVE ENSDPKSEQG CSLPDGSQRQ  660
SCQLQISDVK KSNDDEFHIG NGHSDSYCAD ATAKSNSEGS QGPLCPTGAF SALHLKGTDC  720
TNPSSSLHPS SESIRDQIVG RNSPSIQQAD LDMLDNHEAK DKDHMHPSNS GMTDSSSGSA  780
SSHPTFKQNT RSALKDTASP ALTVKATYNG DTVRFKFLPS MGWYHLLEEI AKRFKLPTGA  840
FQLKYKDDED EWVILANDSD LQECVDVLDS IGSRNVKLQV RDLSCIVSSS GSSTCLQLAA  900
HSS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0607530.0AK060753.1 Oryza sativa Japonica Group cDNA clone:001-032-G10, full insert sequence.
GenBankAK1031540.0AK103154.1 Oryza sativa Japonica Group cDNA clone:J033120P08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636521.10.0protein NLP2
RefseqXP_015636522.10.0protein NLP2
RefseqXP_015636523.10.0protein NLP2
SwissprotQ0JC270.0NLP2_ORYSJ; Protein NLP2
TrEMBLA0A0E0KSB00.0A0A0E0KSB0_ORYPU; Uncharacterized protein
STRINGOPUNC04G15130.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.21e-168Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]