PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G14460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 385aa MW: 41988.9 Da PI: 6.0256 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 85.2 | 8.1e-27 | 50 | 118 | 2 | 70 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W ++e+l+Li++rrem+++++++k++k+lWe++s++mre+gf rsp++C++kw+nl k++kk + ++++ OPUNC04G14460.1 50 WVQDETLCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEFKKARSHARG 118 ***************************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.293 | 42 | 106 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-4 | 43 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-5 | 46 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 5.02E-28 | 48 | 113 | No hit | No description |
Pfam | PF13837 | 3.7E-18 | 49 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MLLSGPSPQQ PTPPLLLPES SGEDGGHDSS SRAAAASGGG GGPKKRAETW VQDETLCLIA 60 LRREMDSHFN TSKSNKHLWE AISARMREQG FDRSPTMCTD KWRNLLKEFK KARSHARGGG 120 GGGVGAGGAG PGGNCPAKMA CYKEIDDLLK RRGKPTGGGG AAVGSGTVKS PTITSKIDSY 180 LQFDKGFEDA NIPFGPVEAS GRSLLSVEDR LEPDSHPLAL TADAVATNGV NPWNWRDTST 240 NGGDNQVTFG GRVILVKWGD YTKRIGIDGT AEAIKEAIKS AFGLRTRRAF WLEDEDEVVR 300 SLDRDMPVGT YTLHLDNGMT IKLCMFENDE VRTEDKTFYT EEDFRDFLSR RGWTLLREYS 360 GYRIADTLDD LRPGVIYEGM RSLGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 5e-38 | 44 | 144 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00640 | PBM | Transfer from MDP0000164819 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103296 | 0.0 | AK103296.1 Oryza sativa Japonica Group cDNA clone:J033125B02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635625.2 | 0.0 | trihelix transcription factor GT-4 | ||||
Swissprot | Q9FX53 | 1e-142 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A0E0KS26 | 0.0 | A0A0E0KS26_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G14460.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5631 | 37 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 1e-138 | Trihelix family protein |
Publications ? help Back to Top | |||
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