PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G13980.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 367aa    MW: 40949 Da    PI: 5.1905
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G13980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.83.3e-30592002128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 
                      p G++F+P+d el+  +L++k+++ +      ++ +   +kev +i++++P++Lp  +k + ++ +fF++ +++y  g+rk+r+          
  OPUNC04G13980.1  59 PDGVKFDPSDLELL-GHLERKINQGNpgpeslIDHFIPtLKEVeGICYTHPENLP-GIKLDGTSSHFFHRISNAYGCGQRKRRKirhnshaasD 150
                      88************.88****999987887764444444899988**********.66778899*******************85677666554 PP

              NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                      ++ +W++tgk+k++++ +g ++g kk+Lv+ykg +++k e+++Wvmh+y+l
  OPUNC04G13980.1 151 ENIRWHKTGKSKQIFH-NGVKKGWKKILVLYKGsKNNKIEQANWVMHQYNL 200
                      4778************.999***********995667789*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-3343219IPR003441NAC domain
PROSITE profilePS5100528.29358219IPR003441NAC domain
PfamPF023651.1E-1359200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MARPWIIAGG KVIATKIRNA TQLLSCKLGE LVPEAWRECP NCKCRIDNSD VTLQWPEFPD  60
GVKFDPSDLE LLGHLERKIN QGNPGPESLI DHFIPTLKEV EGICYTHPEN LPGIKLDGTS  120
SHFFHRISNA YGCGQRKRRK IRHNSHAASD ENIRWHKTGK SKQIFHNGVK KGWKKILVLY  180
KGSKNNKIEQ ANWVMHQYNL GVEEGGEDGE LVVSKVFYQL SSKQTGTPEL DSVTEEASDA  240
LTIRSDPITP ITNPPQPRRL MNSPCDTEQN ATVSRDQEEG DCGTSTLRPK IEPENRPGCA  300
GTSADEDLEA LLRCFEFPGD PSAPLEEPLP WPDMDTFYPM SPGLDGVTLA ELFQSQESFG  360
WADGDQT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6303300.0AB630330.1 Oryza sativa Japonica Group BET1 mRNA for transcription factor, complete cds, cultivar: Wataribune.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653523.10.0PREDICTED: NAC domain-containing protein 8-like
TrEMBLA0A0E0KRW80.0A0A0E0KRW8_ORYPU; Uncharacterized protein
STRINGOPUNC04G13980.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.14e-62NAC family protein