PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC04G13820.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 258aa MW: 28462.9 Da PI: 4.2279

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G13820.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	37.3	8.4e-12	13	153	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLp.k..kvka.eek..ewyfFskrdkkyatgkrknratksgyWka 85 lp GfrF+P+d +++ ++L + + + + +v++ vd++ + P +p + + +++ + ++F + + + + r + g W OPUNC04G13820.1 13 LPLGFRFRPSDRQIIANHLGPMALHGAdslPQKGDVVEGVDVFATRPDAIPfErrH--VwGRNevRAHYFGDQPTD----S-RGREVPGGAWLP 99 699***************9988877575444578**********953432..133331356999876554....3.456779998 PP NAM 86 tgk.....dkevlsk.kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 g dk+ + + ++e+v ++ f ra + + +W m+eyrl OPUNC04G13820.1 100 CGGgggggDKAYCGAdGEEAVAYRRKYEFRaaaeeADRAGEVARPRWRMKEYRL 153 766344435555554678889*****9776544577777899*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-17	4	182	IPR003441	NAC domain
PROSITE profile	PS51005	19.56	13	183	IPR003441	NAC domain
Pfam	PF02365	5.4E-8	14	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MASSAHMAAV LNLPLGFRFR PSDRQIIANH LGPMALHGAD SLPQKGDVVE GVDVFATRPD 60 AIPFERRHVW GRNEVRAHYF GDQPTDSRGR EVPGGAWLPC GGGGGGGDKA YCGADGEEAV 120 AYRRKYEFRA AAEEADRAGE VARPRWRMKE YRLNKSAAAF RRAYAQPNPK ANMDCVVREI 180 YTKAAVPPPT PPSGRSGDEE MQEGSDYSVM DEDFEDEDDD DDELVDYLLQ DFEDGDSDED 240 QNQPAAAEDG EYSDEDQP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL731582	0.0	AL731582.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855189	0.0	CR855189.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106G07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634860.1	1e-147	NAC domain-containing protein 67-like
TrEMBL	A0A0E0KRU9	0.0	A0A0E0KRU9_ORYPU; Uncharacterized protein
STRING	OPUNC04G13820.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12891	22	31